Detailed information NTG0976040

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: WMB06_RS01065
• Genome accession: NZ_CP151275
• Coordinates: 222645..223667 (+)
• Length: 340 a.a.
• NCBI ID: WP_341677220.1
• Uniprot ID: -
• Organism: Niveibacterium sp. SC-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	223686..236139	222645..223667	flank	19

Gene organization within MGE regions

Location: 222645..236139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMB06_RS01065 (WMB06_01065)	recA	222645..223667 (+)	1023	WP_341677220.1	recombinase RecA	Machinery gene
WMB06_RS01070 (WMB06_01070)	recX	223686..224135 (+)	450	WP_341677221.1	recombination regulator RecX	-
WMB06_RS01075 (WMB06_01075)	lptB	224122..224844 (+)	723	WP_341677222.1	LPS export ABC transporter ATP-binding protein	-
WMB06_RS01080 (WMB06_01080)	rpoN/rpoN1	224869..226326 (+)	1458	WP_341677223.1	RNA polymerase factor sigma-54	Machinery gene
WMB06_RS01085 (WMB06_01085)	raiA	226338..226661 (+)	324	WP_341677224.1	ribosome-associated translation inhibitor RaiA	-
WMB06_RS01090 (WMB06_01090)	ptsN	226766..227233 (+)	468	WP_341677225.1	PTS IIA-like nitrogen regulatory protein PtsN	-
WMB06_RS01095 (WMB06_01095)	hprK	227220..228173 (+)	954	WP_341677226.1	HPr(Ser) kinase/phosphatase	-
WMB06_RS01100 (WMB06_01100)	-	228426..228878 (+)	453	WP_341677227.1	hypothetical protein	-
WMB06_RS01105 (WMB06_01105)	cutA	228959..229303 (+)	345	WP_341677228.1	divalent-cation tolerance protein CutA	-
WMB06_RS01110 (WMB06_01110)	dsbD	229313..231139 (+)	1827	WP_341677229.1	protein-disulfide reductase DsbD	-
WMB06_RS01115 (WMB06_01115)	trmB	231489..232211 (-)	723	WP_341677230.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	-
WMB06_RS01120 (WMB06_01120)	-	232216..233001 (-)	786	WP_341677231.1	thiazole synthase	-
WMB06_RS01125 (WMB06_01125)	thiS	233053..233256 (-)	204	WP_341677232.1	sulfur carrier protein ThiS	-
WMB06_RS01135 (WMB06_01135)	ltrA	234469..236139 (+)	1671	WP_341677233.1	group II intron reverse transcriptase/maturase	-

Sequence

Protein

• Length: 340 a.a.
• Molecular weight: 36432.79 Da
• Isoelectric Point: 5.1700

>NTDB_id=976040 WMB06_RS01065 WP_341677220.1 222645..223667(+) (recA) [Niveibacterium sp. SC-1]
MDENKAKALQAALAQIEKQFGKGSIMRLGDGEVESDIQACSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQAI
AEMQKLGGTAAFIDAEHALDVVYAQKLGVNVGDLLISQPDTGEQALEIADMLVRSGGVDILVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTGNIKRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGTIKKGDEVIGS
ETKVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDMGVEQRFVDKSGAWYAYNGEKIGQGKDNAREFLRAHPEVAREIE
NKIREALGLPPLPAAEAAAA

Nucleotide

• Length: 1023 bp

>NTDB_id=976040 WMB06_RS01065 WP_341677220.1 222645..223667(+) (recA) [Niveibacterium sp. SC-1]
ATGGACGAGAACAAAGCCAAAGCCCTGCAGGCCGCGCTCGCGCAGATCGAAAAGCAGTTCGGCAAGGGTTCGATCATGCG
GTTGGGCGATGGCGAGGTGGAGAGCGACATCCAGGCGTGCTCCACCGGCTCGCTCGGTCTCGATATTGCGCTGGGCATCG
GCGGCCTGCCGCGCGGCCGGGTGATCGAAATCTACGGTCCGGAATCGTCCGGCAAGACCACCCTGACGCTGCAGGCGATC
GCCGAAATGCAGAAGCTCGGCGGCACCGCAGCCTTTATCGACGCCGAGCACGCACTGGACGTGGTTTACGCCCAGAAGCT
GGGCGTCAATGTGGGCGATCTGCTCATCTCCCAGCCCGATACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGC
GCTCGGGCGGTGTGGACATCCTCGTGATCGACTCGGTGGCGGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTGCCGGGCCTGCAAGCCCGGCTGATGAGCCAGGCACTGCGCAAGCTCACCGGCAACATCAAGCGCACCAATAC
GATGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGCAACCCCGAAACCACGACCGGCGGTAACG
CGCTCAAGTTCTATGCCTCGGTGCGCCTGGACATCCGTCGCACCGGCACGATCAAGAAGGGCGACGAGGTCATCGGCTCC
GAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGGAAGCGCACTTCGACATCCTGTATGGCGAAGG
CATTTCGCGCGAAGGCGAGATCATCGACATGGGTGTCGAGCAGCGCTTCGTCGACAAGAGCGGTGCCTGGTATGCCTACA
ACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCCCGCGAGTTCCTGCGCGCTCACCCTGAAGTGGCCCGCGAGATCGAG
AACAAGATCCGCGAAGCCTTGGGCCTGCCGCCGCTGCCGGCCGCCGAAGCTGCGGCAGCCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	81.734	95	0.776
recA	Pseudomonas stutzeri DSM 10701	74.312	96.176	0.715
recA	Acinetobacter baumannii D1279779	73.7	96.176	0.709
recA	Acinetobacter baylyi ADP1	73.394	96.176	0.706
recA	Glaesserella parasuis strain SC1401	70.414	99.412	0.7
recA	Vibrio cholerae O1 biovar El Tor strain E7946	71.818	97.059	0.697
recA	Vibrio cholerae strain A1552	71.818	97.059	0.697
recA	Neisseria gonorrhoeae MS11	71.914	95.294	0.685
recA	Neisseria gonorrhoeae MS11	71.914	95.294	0.685
recA	Neisseria gonorrhoeae strain FA1090	71.914	95.294	0.685
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	66.97	97.059	0.65
recA	Helicobacter pylori strain NCTC11637	65.089	99.412	0.647
recA	Helicobacter pylori 26695	64.793	99.412	0.644
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.861	97.353	0.641
recA	Bacillus subtilis subsp. subtilis str. 168	66.258	95.882	0.635
recA	Latilactobacillus sakei subsp. sakei 23K	63.855	97.647	0.624
recA	Streptococcus mutans UA159	61.446	97.647	0.6
recA	Streptococcus pneumoniae Rx1	61.702	96.765	0.597
recA	Streptococcus pneumoniae D39	61.702	96.765	0.597
recA	Streptococcus pneumoniae R6	61.702	96.765	0.597
recA	Streptococcus pneumoniae TIGR4	61.702	96.765	0.597
recA	Lactococcus lactis subsp. cremoris KW2	61.774	96.176	0.594
recA	Streptococcus mitis SK321	61.398	96.765	0.594
recA	Streptococcus pyogenes NZ131	60.909	97.059	0.591
recA	Streptococcus mitis NCTC 12261	61.094	96.765	0.591
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	58.282	95.882	0.559