Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AADW57_RS07895 Genome accession   NZ_CP151273
Coordinates   1687383..1688456 (+) Length   357 a.a.
NCBI ID   WP_341669503.1    Uniprot ID   -
Organism   Alcaligenes sp. SDU_A2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682383..1693456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADW57_RS07880 (AADW57_07880) - 1683306..1684994 (-) 1689 WP_341669500.1 MFS transporter -
  AADW57_RS07885 (AADW57_07885) - 1684998..1686368 (-) 1371 WP_341669501.1 sensor histidine kinase N-terminal domain-containing protein -
  AADW57_RS07890 (AADW57_07890) - 1686487..1687176 (-) 690 WP_341669502.1 response regulator transcription factor -
  AADW57_RS07895 (AADW57_07895) recA 1687383..1688456 (+) 1074 WP_341669503.1 recombinase RecA Machinery gene
  AADW57_RS07900 (AADW57_07900) recX 1688453..1689094 (+) 642 WP_341669504.1 recombination regulator RecX -
  AADW57_RS07905 (AADW57_07905) - 1689192..1690112 (-) 921 WP_341669505.1 LysR family transcriptional regulator -
  AADW57_RS07910 (AADW57_07910) - 1690268..1690390 (+) 123 WP_341669506.1 hypothetical protein -
  AADW57_RS07915 (AADW57_07915) - 1690504..1691082 (+) 579 WP_341669507.1 DUF2889 domain-containing protein -
  AADW57_RS07920 (AADW57_07920) sucC 1691162..1692322 (+) 1161 WP_341669508.1 ADP-forming succinate--CoA ligase subunit beta -
  AADW57_RS07925 (AADW57_07925) sucD 1692344..1693225 (+) 882 WP_341669509.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38388.03 Da        Isoelectric Point: 5.5995

>NTDB_id=976032 AADW57_RS07895 WP_341669503.1 1687383..1688456(+) (recA) [Alcaligenes sp. SDU_A2]
MDDKNSKAVASERSKALAAALTQIEKQFGKGSIMRYGDDNVEHDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKIKGTCAFIDAEHALDVQYAQKLGVNLADLLISQPDTGEQALEITEALVRSGSVDLIVIDSVAALTPK
AEIEGDMGDALPGLQARLMSQALRKLTATIKRANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
RGDEIVGNETRVKVVKNKVAPPFKQTEFDIMYGSGISREGEIIDLGVQAGVVDKAGAWYSYDGNRIGQGKDNVREFLKER
PELAREIENKVREKLGVAPMAAMERAAAAPVAPEGDA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=976032 AADW57_RS07895 WP_341669503.1 1687383..1688456(+) (recA) [Alcaligenes sp. SDU_A2]
ATGGACGACAAAAACAGCAAAGCAGTGGCCTCGGAACGCTCCAAAGCATTGGCGGCCGCCCTGACGCAGATCGAAAAGCA
GTTTGGTAAAGGCTCCATCATGCGTTATGGCGACGACAACGTGGAACACGACATCCAAGTCGTCTCCACCGGGTCCTTGG
GCCTGGATGTCGCCCTGGGTGTCGGCGGCTTGCCACGAGGGCGCGTCATCGAAATCTATGGTCCGGAATCCTCGGGCAAG
ACCACGCTGACTTTGCAGGTCATTGCCGAAATGCAGAAAATCAAGGGTACGTGCGCCTTTATCGACGCCGAACACGCCCT
GGATGTCCAGTACGCGCAAAAGCTGGGCGTTAATCTGGCCGATCTGCTTATTTCCCAGCCCGATACCGGCGAGCAGGCCC
TGGAAATCACCGAAGCCCTGGTGCGCTCCGGTTCGGTAGACCTGATCGTTATCGACTCGGTCGCCGCCCTGACACCCAAG
GCCGAAATCGAGGGCGATATGGGCGATGCCTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGAC
CGCCACCATCAAACGCGCCAACTGCATGGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTCATGTTCGGCAATC
CCGAAACCACCACGGGCGGCAATGCGCTTAAATTCTATTCGTCTGTGCGCCTGGATATACGCCGCATTGGTTCCATCAAG
CGTGGCGACGAAATCGTGGGCAACGAGACACGCGTCAAGGTCGTCAAGAACAAAGTTGCGCCCCCCTTCAAACAGACCGA
ATTCGACATCATGTACGGCAGCGGCATTTCGCGCGAAGGCGAAATCATTGATCTGGGCGTGCAGGCCGGCGTGGTGGACA
AAGCCGGTGCCTGGTATAGCTACGATGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGTGAATTCCTGAAAGAGCGT
CCTGAACTGGCGCGGGAAATCGAAAACAAAGTACGCGAAAAATTAGGCGTGGCTCCTATGGCCGCTATGGAGCGCGCAGC
CGCCGCTCCTGTTGCGCCTGAAGGCGACGCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.739

96.639

0.79
  recA Pseudomonas stutzeri DSM 10701

69.855

96.639

0.675
  recA Acinetobacter baumannii D1279779

71.827

90.476

0.65
  recA Glaesserella parasuis strain SC1401

68.843

94.398

0.65
  recA Neisseria gonorrhoeae MS11

69.909

92.157

0.644
  recA Neisseria gonorrhoeae strain FA1090

69.909

92.157

0.644
  recA Neisseria gonorrhoeae MS11

69.909

92.157

0.644
  recA Acinetobacter baylyi ADP1

71.207

90.476

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.898

90.476

0.641
  recA Vibrio cholerae strain A1552

70.898

90.476

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

92.157

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.438

92.157

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

91.597

0.594
  recA Helicobacter pylori 26695

63.939

92.437

0.591
  recA Helicobacter pylori strain NCTC11637

63.636

92.437

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

91.597

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

90.476

0.566
  recA Streptococcus pneumoniae D39

59.821

94.118

0.563
  recA Streptococcus pneumoniae Rx1

59.821

94.118

0.563
  recA Streptococcus pneumoniae R6

59.821

94.118

0.563
  recA Streptococcus pneumoniae TIGR4

59.821

94.118

0.563
  recA Streptococcus mitis NCTC 12261

58.702

94.958

0.557
  recA Streptococcus mitis SK321

58.702

94.958

0.557
  recA Streptococcus pyogenes NZ131

58.806

93.838

0.552
  recA Streptococcus mutans UA159

58.333

94.118

0.549
  recA Lactococcus lactis subsp. cremoris KW2

56.047

94.958

0.532

Multiple sequence alignment