Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AABC73_RS07295 Genome accession   NZ_CP151076
Coordinates   1591071..1592138 (+) Length   355 a.a.
NCBI ID   WP_020289447.1    Uniprot ID   A0A085UPB2
Organism   Pseudomonas sp. G.S.17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1586071..1597138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS07275 (AABC73_07280) fdxA 1586860..1587183 (-) 324 WP_341523032.1 ferredoxin FdxA -
  AABC73_RS07280 (AABC73_07285) mutS 1587431..1589998 (-) 2568 WP_341524187.1 DNA mismatch repair protein MutS -
  AABC73_RS07285 (AABC73_07290) - 1590275..1590406 (+) 132 WP_341523033.1 hypothetical protein -
  AABC73_RS07290 (AABC73_07295) - 1590477..1590977 (+) 501 WP_341523034.1 CinA family protein -
  AABC73_RS07295 (AABC73_07300) recA 1591071..1592138 (+) 1068 WP_020289447.1 recombinase RecA Machinery gene
  AABC73_RS07300 (AABC73_07305) recX 1592145..1592612 (+) 468 WP_341523035.1 recombination regulator RecX -
  AABC73_RS07305 (AABC73_07310) - 1592613..1593728 (-) 1116 WP_341523036.1 TIGR00730 family Rossman fold protein -
  AABC73_RS07310 (AABC73_07315) - 1593969..1594379 (-) 411 WP_065834833.1 quorum-sensing-regulated virulence factor family protein -
  AABC73_RS07315 (AABC73_07320) - 1594633..1595343 (+) 711 WP_341523037.1 tRNA-uridine aminocarboxypropyltransferase -
  AABC73_RS07320 (AABC73_07325) erdR 1595589..1596236 (+) 648 WP_341523038.1 response regulator transcription factor ErdR -
  AABC73_RS07325 (AABC73_07330) - 1596321..1596686 (+) 366 WP_341523039.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37725.38 Da        Isoelectric Point: 5.8070

>NTDB_id=974689 AABC73_RS07295 WP_020289447.1 1591071..1592138(+) (recA) [Pseudomonas sp. G.S.17]
MDENKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLAVLHGFVEKSGAWYSYQGSKIGQGKANSAKYLADNPEVGAALEK
MIRDKLLTPGVDTKAEGSRPAVAPAADMAEADVDI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=974689 AABC73_RS07295 WP_020289447.1 1591071..1592138(+) (recA) [Pseudomonas sp. G.S.17]
ATGGACGAGAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAATTCGGTAAAGGTGCCGTAATGCG
CATGGGCGACCATGACCGCCAGGCGATTCCTTCTATCTCTACCGGTTCGCTCGGTCTGGATATCGCACTAGGCATCGGTG
GCTTGCCTAAAGGCCGGATCGTTGAAATCTACGGTCCGGAATCTTCCGGTAAAACCACGCTGACCCTTTCGGTTATCGCT
CAGGCCCAGAAAATGGGCGCAACCTGCGCGTTCGTCGATGCGGAACACGCACTCGATCCTGAATACGCCGGCAAGCTGGG
CGTAAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CGAATGCGATCGATGTGATCGTGGTCGACTCCGTGGCAGCACTGGTGCCAAAGGCCGAAATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGTCTGCAGGCTCGTCTGATGTCTCAAGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGCATGAAAATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACGGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTACGTCTGGATATCCGTCGTACAGGTGCCGTAAAAGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
TTACCTGAACGGCGAGATCATCGATCTGGCTGTGCTGCACGGCTTCGTTGAGAAGTCCGGCGCGTGGTACAGCTATCAGG
GCAGCAAGATCGGTCAGGGTAAAGCCAACTCGGCCAAGTACCTGGCGGATAACCCGGAAGTCGGTGCAGCACTCGAGAAG
ATGATTCGCGATAAACTGCTGACTCCAGGCGTTGACACCAAGGCCGAAGGTTCACGTCCTGCTGTCGCTCCGGCTGCTGA
CATGGCTGAAGCTGACGTCGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085UPB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.535

99.437

0.87
  recA Acinetobacter baylyi ADP1

75.821

94.366

0.715
  recA Acinetobacter baumannii D1279779

75.602

93.521

0.707
  recA Vibrio cholerae strain A1552

74.772

92.676

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.772

92.676

0.693
  recA Glaesserella parasuis strain SC1401

73.457

91.268

0.67
  recA Neisseria gonorrhoeae MS11

68.497

97.465

0.668
  recA Neisseria gonorrhoeae MS11

68.497

97.465

0.668
  recA Neisseria gonorrhoeae strain FA1090

68.497

97.465

0.668
  recA Ralstonia pseudosolanacearum GMI1000

71.827

90.986

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.611

94.93

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

94.085

0.592
  recA Helicobacter pylori 26695

59.77

98.028

0.586
  recA Helicobacter pylori strain NCTC11637

65.064

87.887

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

60.748

90.423

0.549
  recA Streptococcus mitis SK321

60.062

90.986

0.546
  recA Streptococcus mutans UA159

59.692

91.549

0.546
  recA Streptococcus pneumoniae TIGR4

59.202

91.831

0.544
  recA Streptococcus pneumoniae D39

59.202

91.831

0.544
  recA Streptococcus pneumoniae R6

59.202

91.831

0.544
  recA Streptococcus pneumoniae Rx1

59.202

91.831

0.544
  recA Streptococcus pyogenes NZ131

58.537

92.394

0.541
  recA Streptococcus mitis NCTC 12261

59.443

90.986

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

87.887

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

91.831

0.53
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521

Multiple sequence alignment