Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WMY94_RS08650 Genome accession   NZ_CP150826
Coordinates   1677211..1678308 (-) Length   365 a.a.
NCBI ID   WP_014563949.1    Uniprot ID   U4QLH9
Organism   Lactobacillus helveticus strain 191404     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672211..1683308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY94_RS08635 (WMY94_08615) - 1673508..1674170 (+) 663 WP_014563946.1 YigZ family protein -
  WMY94_RS08640 (WMY94_08620) - 1674197..1675354 (-) 1158 WP_014563947.1 glycosyltransferase family 4 protein -
  WMY94_RS08645 (WMY94_08625) rny 1675461..1677092 (-) 1632 WP_023060695.1 ribonuclease Y -
  WMY94_RS08650 (WMY94_08630) recA 1677211..1678308 (-) 1098 WP_014563949.1 recombinase RecA Machinery gene
  WMY94_RS08655 (WMY94_08635) pgsA 1678492..1679052 (-) 561 WP_012211604.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WMY94_RS08660 (WMY94_08640) - 1679075..1680193 (-) 1119 WP_054607489.1 RodZ family helix-turn-helix domain-containing protein -
  WMY94_RS08665 (WMY94_08645) ymfI 1680261..1680989 (-) 729 WP_023060697.1 elongation factor P 5-aminopentanone reductase -
  WMY94_RS08670 (WMY94_08650) - 1680990..1682246 (-) 1257 WP_014563952.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39460.95 Da        Isoelectric Point: 6.8993

>NTDB_id=972702 WMY94_RS08650 WP_014563949.1 1677211..1678308(-) (recA) [Lactobacillus helveticus strain 191404]
MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKHGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEDHPDIYQDIQ
QQVRQAYGIDEKSVADREDPEKIKKKREEAKAEKTAETKKATDDK

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=972702 WMY94_RS08650 WP_014563949.1 1677211..1678308(-) (recA) [Lactobacillus helveticus strain 191404]
ATGGCCAAAGATGAAAAAAAGGCTGCTTTAGATGCAGCGCTCAAAAAAATCGAAAAGAACTTTGGTAAGGGTGCTGTTAT
GCGTATGGGTGAAAAAGCTGATACCCAAATTTCAACAGTTCCAACAGGTTCACTTGCTTTAGATGCTGCTATTGGTGTTG
GCGGCTATCCTCGAGGACGTATTATTGAAGTATATGGACCTGAATCATCTGGTAAAACCACTGTTGCTCTTCATGCAGTA
GCTGAAGTACAAAAACATGGTGGTACAGCCGCTTATATTGATGCAGAAAATGCAATGGATCCAGCATATGCTGAAGCATT
AGGTGTAGACATTGATTCACTTATTTTATCTCAACCTAATACAGGTGAAGAAGGTTTACAAATTGCTGATACTTTAATTT
CTAGTGGTGCCATTGATATTGTGGTAGTTGACTCTGTTGCAGCGTTAGTTCCACGTGCTGAAATTGAAGGCGAGATGGGG
GATGCTCATGTTGGTCTTCAAGCTCGATTAATGAGTCAGGCTTTGCGTAAATTATCTGGTACTATTTCAAAGACTAAGAC
CATTGCAATTTTTATTAATCAGATTCGTGAAAAAGTTGGGGTTATGTTTGGTAACCCAGAAACTACTCCAGGTGGTCGTG
CTCTTAAGTTTTATTCAACTATTCGACTTGAAGTAAGAAGAGCAGAACAGATCAAGCAATCTGGTGATGTGATTGGTAAC
CGTGTCAAGATTAAAGTAGTGAAGAACAAGGTTGCTCCACCATTTAAGGTGGCTGAAGTAGATATCATGTATGGTAAAGG
TATTTCTCAAAGTGGAGAATTGCTTGATATGGCCGCTGACAAGGATATTATTGATAAAGCTGGATCATGGTATTCATACA
AGAGTGATCGGATCGGTCAAGGACGAGAAAATGCTAAGAAATATCTTGAAGATCATCCAGATATCTATCAAGATATTCAA
CAACAAGTTCGTCAAGCATACGGCATTGATGAAAAATCAGTAGCTGATCGTGAGGATCCTGAAAAAATAAAGAAAAAACG
CGAAGAAGCAAAAGCAGAGAAGACTGCAGAAACTAAAAAGGCAACTGATGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4QLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.873

90.685

0.742
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

90.411

0.66
  recA Streptococcus pneumoniae D39

66.106

97.808

0.647
  recA Streptococcus pneumoniae R6

66.106

97.808

0.647
  recA Streptococcus pneumoniae TIGR4

66.106

97.808

0.647
  recA Streptococcus pneumoniae Rx1

66.106

97.808

0.647
  recA Streptococcus mutans UA159

66.011

97.534

0.644
  recA Streptococcus mitis NCTC 12261

67.544

93.699

0.633
  recA Streptococcus pyogenes NZ131

69.605

90.137

0.627
  recA Streptococcus mitis SK321

68.693

90.137

0.619
  recA Lactococcus lactis subsp. cremoris KW2

65.774

92.055

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

89.863

0.545
  recA Neisseria gonorrhoeae MS11

60.061

89.863

0.54
  recA Neisseria gonorrhoeae strain FA1090

60.061

89.863

0.54
  recA Neisseria gonorrhoeae MS11

60.061

89.863

0.54
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.522

92.877

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

88.493

0.529
  recA Acinetobacter baumannii D1279779

59.443

88.493

0.526
  recA Acinetobacter baylyi ADP1

59.317

88.219

0.523
  recA Helicobacter pylori strain NCTC11637

55.556

93.699

0.521
  recA Helicobacter pylori 26695

55.556

93.699

0.521
  recA Pseudomonas stutzeri DSM 10701

59.19

87.945

0.521
  recA Glaesserella parasuis strain SC1401

53.561

96.164

0.515
  recA Ralstonia pseudosolanacearum GMI1000

58.466

85.753

0.501
  recA Vibrio cholerae strain A1552

56.211

88.219

0.496
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.211

88.219

0.496

Multiple sequence alignment