Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHH48_RS22760 Genome accession   NZ_CP150303
Coordinates   5067876..5068937 (-) Length   353 a.a.
NCBI ID   WP_076324928.1    Uniprot ID   A0A1R1AV65
Organism   Paenibacillus sp. FSL F4-0100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5062876..5073937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH48_RS22740 (MHH48_22740) - 5063777..5064037 (-) 261 WP_006211249.1 stage V sporulation protein S -
  MHH48_RS22745 (MHH48_22745) - 5064167..5064961 (-) 795 WP_179090707.1 TIGR00282 family metallophosphoesterase -
  MHH48_RS22750 (MHH48_22750) rny 5065098..5066639 (-) 1542 WP_076324926.1 ribonuclease Y -
  MHH48_RS22755 (MHH48_22755) - 5066999..5067736 (-) 738 WP_076324927.1 RecX family transcriptional regulator -
  MHH48_RS22760 (MHH48_22760) recA 5067876..5068937 (-) 1062 WP_076324928.1 recombinase RecA Machinery gene
  MHH48_RS22765 (MHH48_22765) - 5069226..5070488 (-) 1263 WP_076324929.1 competence/damage-inducible protein A -
  MHH48_RS22770 (MHH48_22770) pgsA 5070598..5071185 (-) 588 WP_076324930.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHH48_RS22775 (MHH48_22775) - 5071444..5071935 (-) 492 WP_076324931.1 YajQ family cyclic di-GMP-binding protein -
  MHH48_RS22780 (MHH48_22780) - 5072084..5072257 (-) 174 WP_144023504.1 DUF4175 domain-containing protein -
  MHH48_RS22785 (MHH48_22785) - 5072335..5073327 (-) 993 WP_076324932.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38222.54 Da        Isoelectric Point: 4.9251

>NTDB_id=970062 MHH48_RS22760 WP_076324928.1 5067876..5068937(-) (recA) [Paenibacillus sp. FSL F4-0100]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEIVPSGSLALDIALGTGGLPRGRIIEVYGPESSGKTTVALHAIAE
VQRAGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT
RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTDLDIVDKSGAWYSYAGDRLGQGRENAKQFLKENPEIASVIENK
IREASNLTTAVPEPSEKDKEQEEIEEQELFKVE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=970062 MHH48_RS22760 WP_076324928.1 5067876..5068937(-) (recA) [Paenibacillus sp. FSL F4-0100]
TTGTCAGATCGTCGTGCTGCGCTGGAAATGGCGCTTCGTCAGATAGAGAAACAGTTCGGAAAAGGTTCCATCATGAAACT
GGGTGAATCCACCCACATGCAAGTTGAGATTGTGCCGAGCGGATCGTTGGCATTGGATATAGCTTTAGGAACCGGCGGCT
TGCCTAGAGGCCGGATTATTGAAGTGTATGGACCGGAATCCTCCGGTAAAACAACAGTAGCCCTCCATGCTATTGCGGAA
GTTCAGAGGGCTGGTGGACAGGCTGCATTTATCGATGCCGAGCATGCTCTGGATCCATCGTATGCAAGCAAACTGGGCGT
TAATATTGATGAATTGCTGCTCTCCCAACCGGACACGGGTGAGCAGGCGTTGGAAATTGCGGAAGCTCTGGTACGCAGTG
GTGCAGTGGATGTCATCGTTATTGACTCGGTTGCTGCGCTTGTTCCAAAAGCTGAAATTGAAGGCGACATGGGGGACTCC
CACGTGGGTCTGCAAGCTCGTCTGATGTCCCAGGCTCTTCGTAAATTGTCGGGTGCTATTAATAAATCGAAAACGATTGC
CATCTTTATCAACCAGCTTCGTGAGAAGGTTGGTGTTATGTTTGGTAACCCTGAGACGACTCCAGGCGGACGTGCTCTGA
AGTTCTACTCGACGGTTCGTTTGGATGTGCGTCGAATTGAGAGCATCAAGATGGGGAACGATGTGGTGGGTAACCGCACA
CGGATTAAGGTTGTTAAGAACAAGGTAGCGCCACCTTTCAAACAGGCTGAGCTTGATATTATGTACGGTGAAGGCATCTC
TAGAGAGGGAAGCCTAATCGATATCGGAACGGACCTCGATATCGTGGATAAGAGTGGTGCATGGTATTCTTATGCAGGTG
ACCGTCTTGGCCAAGGACGTGAGAATGCGAAGCAATTCTTGAAGGAGAATCCGGAGATTGCTAGTGTTATCGAGAACAAA
ATCCGTGAAGCGAGCAATCTGACTACGGCTGTTCCTGAGCCTTCCGAGAAGGATAAGGAACAAGAGGAAATAGAAGAGCA
AGAGTTGTTTAAAGTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1AV65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.18

92.635

0.771
  recA Latilactobacillus sakei subsp. sakei 23K

70.175

96.884

0.68
  recA Streptococcus pneumoniae D39

67.241

98.584

0.663
  recA Streptococcus pneumoniae Rx1

67.241

98.584

0.663
  recA Streptococcus pneumoniae R6

67.241

98.584

0.663
  recA Streptococcus pneumoniae TIGR4

67.241

98.584

0.663
  recA Streptococcus mutans UA159

65.537

100

0.657
  recA Streptococcus mitis NCTC 12261

69.846

92.068

0.643
  recA Streptococcus mitis SK321

69.538

92.068

0.64
  recA Streptococcus pyogenes NZ131

69.444

91.785

0.637
  recA Neisseria gonorrhoeae MS11

64.348

97.734

0.629
  recA Neisseria gonorrhoeae MS11

64.348

97.734

0.629
  recA Neisseria gonorrhoeae strain FA1090

64.348

97.734

0.629
  recA Vibrio cholerae strain A1552

68.536

90.935

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.536

90.935

0.623
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.484

0.62
  recA Glaesserella parasuis strain SC1401

62.108

99.433

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.757

96.601

0.606
  recA Ralstonia pseudosolanacearum GMI1000

68.153

88.952

0.606
  recA Acinetobacter baylyi ADP1

61.919

97.45

0.603
  recA Acinetobacter baumannii D1279779

62.353

96.317

0.601
  recA Pseudomonas stutzeri DSM 10701

63.72

92.918

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.635

0.589
  recA Helicobacter pylori 26695

60.641

97.167

0.589
  recA Helicobacter pylori strain NCTC11637

60.35

97.167

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.501

0.569

Multiple sequence alignment