Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NST93_RS05670 Genome accession   NZ_CP150301
Coordinates   1030235..1031281 (-) Length   348 a.a.
NCBI ID   WP_405102052.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL H7-0719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025235..1036281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST93_RS05655 (NST93_05635) - 1026871..1027131 (-) 261 WP_405102046.1 stage V sporulation protein S -
  NST93_RS05660 (NST93_05640) - 1027280..1028077 (-) 798 WP_405102048.1 TIGR00282 family metallophosphoesterase -
  NST93_RS05665 (NST93_05645) rny 1028405..1029970 (-) 1566 WP_405102050.1 ribonuclease Y -
  NST93_RS05670 (NST93_05650) recA 1030235..1031281 (-) 1047 WP_405102052.1 recombinase RecA Machinery gene
  NST93_RS05675 (NST93_05655) - 1031454..1032704 (-) 1251 WP_405102054.1 competence/damage-inducible protein A -
  NST93_RS05680 (NST93_05660) pgsA 1032701..1033279 (-) 579 WP_405102056.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST93_RS05685 (NST93_05665) - 1033465..1034361 (-) 897 WP_405102058.1 helix-turn-helix domain-containing protein -
  NST93_RS05690 (NST93_05670) - 1034379..1035170 (-) 792 WP_405102060.1 YmfK family protein -
  NST93_RS05695 (NST93_05675) - 1035332..1035595 (-) 264 WP_405102062.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37760.78 Da        Isoelectric Point: 4.7844

>NTDB_id=969990 NST93_RS05670 WP_405102052.1 1030235..1031281(-) (recA) [Oceanobacillus sp. FSL H7-0719]
MSERKQALDMALRQIEKQFGKGSIMKLGEQGTQKIATIPSGSLALDVALGIGGYPKGRVIEIYGPESSGKTTVALHAIAE
AQKQGGQAAFIDAEHALDPTYARALGVNTDELLLSQPDTGEQALEITEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSKATAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMIGNRA
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGEILDVGAELDIVQKSGAWYSYNGERLGQGRENSKQFLSENPEIMNEIHQA
IRDYYELDETPAEAAEEKTTEDQESLDI

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=969990 NST93_RS05670 WP_405102052.1 1030235..1031281(-) (recA) [Oceanobacillus sp. FSL H7-0719]
TTGAGTGAGAGAAAACAAGCTTTAGATATGGCTTTAAGACAAATAGAAAAACAATTTGGTAAAGGTTCGATTATGAAACT
GGGTGAACAAGGGACACAAAAGATTGCTACTATTCCCAGCGGTTCATTAGCATTGGATGTGGCTCTAGGTATTGGAGGCT
ATCCAAAAGGAAGAGTAATCGAGATTTACGGACCTGAATCATCAGGTAAGACAACTGTAGCACTGCATGCAATTGCAGAA
GCGCAAAAACAAGGCGGACAAGCGGCATTTATTGATGCTGAGCATGCACTTGATCCAACATACGCACGTGCTCTGGGTGT
AAATACAGATGAATTATTACTGTCACAGCCAGATACTGGAGAACAGGCTTTAGAAATTACAGAGGCATTGGTACGCAGTG
GTGCAGTTGATATCATTGTAGTTGACTCTGTTGCTGCATTAGTTCCCAAAGCTGAAATTGAAGGAGAAATGGGAGACTCT
CATATGGGTCTGCAAGCACGTCTGATGTCTCAGGCATTACGTAAGCTTTCAGGTGCGATAAATAAATCGAAAGCGACGGC
AATATTTATTAACCAGGTTCGTGAAAAAATTGGAGTTATGTTTGGTAATCCGGAAACAACTCCAGGTGGACGAGCACTTA
AATTCTACTCATCTGTACGTCTGGAAGTACGCCGGGCAGAAACTCTAAAGCAAGGCAATGAAATGATCGGAAACAGAGCG
AGAATTAAAGTAGTAAAGAATAAGGTGGCACCTCCATTTAAACAGGCCGAAGTAGACATCATGTACGGTGAAGGAATTTC
TAAAGAAGGAGAAATTCTCGATGTCGGTGCGGAACTTGATATTGTGCAGAAGAGTGGAGCTTGGTATTCATACAATGGTG
AACGTTTAGGACAAGGCAGAGAAAACTCTAAGCAGTTCCTGTCTGAAAATCCTGAGATTATGAATGAAATTCATCAGGCA
ATTCGGGATTATTATGAATTGGATGAAACCCCAGCTGAAGCTGCCGAAGAAAAAACAACAGAAGATCAAGAATCACTTGA
TATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.622

94.253

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

98.276

0.695
  recA Streptococcus mitis NCTC 12261

65.084

100

0.67
  recA Streptococcus mutans UA159

66.859

99.713

0.667
  recA Streptococcus mitis SK321

67.151

98.851

0.664
  recA Streptococcus pneumoniae Rx1

66.282

99.713

0.661
  recA Streptococcus pneumoniae D39

66.282

99.713

0.661
  recA Streptococcus pneumoniae R6

66.282

99.713

0.661
  recA Streptococcus pneumoniae TIGR4

66.282

99.713

0.661
  recA Streptococcus pyogenes NZ131

68.827

93.103

0.641
  recA Pseudomonas stutzeri DSM 10701

62.899

99.138

0.624
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.601

92.241

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

94.253

0.615
  recA Vibrio cholerae strain A1552

65.432

93.103

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.432

93.103

0.609
  recA Helicobacter pylori 26695

62.059

97.701

0.606
  recA Helicobacter pylori strain NCTC11637

62.059

97.701

0.606
  recA Glaesserella parasuis strain SC1401

65.732

92.241

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.253

0.606
  recA Acinetobacter baylyi ADP1

60.756

98.851

0.601
  recA Neisseria gonorrhoeae MS11

63.914

93.966

0.601
  recA Neisseria gonorrhoeae MS11

63.914

93.966

0.601
  recA Neisseria gonorrhoeae strain FA1090

63.914

93.966

0.601
  recA Acinetobacter baumannii D1279779

63.889

93.103

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.954

0.569

Multiple sequence alignment