Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHI52_RS11885 Genome accession   NZ_CP150295
Coordinates   2615188..2616252 (+) Length   354 a.a.
NCBI ID   WP_036609261.1    Uniprot ID   A0AAN4RNY1
Organism   Paenibacillus sp. FSL H8-0283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2610188..2621252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI52_RS11860 (MHI52_11855) - 2610730..2611788 (+) 1059 WP_405159061.1 helix-turn-helix domain-containing protein -
  MHI52_RS11865 (MHI52_11860) - 2611862..2612026 (+) 165 WP_167350848.1 hypothetical protein -
  MHI52_RS11870 (MHI52_11865) - 2612182..2612673 (+) 492 WP_047842512.1 YajQ family cyclic di-GMP-binding protein -
  MHI52_RS11875 (MHI52_11870) pgsA 2612993..2613580 (+) 588 WP_127543730.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI52_RS11880 (MHI52_11875) - 2613688..2614944 (+) 1257 WP_036670416.1 competence/damage-inducible protein A -
  MHI52_RS11885 (MHI52_11880) recA 2615188..2616252 (+) 1065 WP_036609261.1 recombinase RecA Machinery gene
  MHI52_RS11890 (MHI52_11885) - 2616535..2617272 (+) 738 WP_074094594.1 regulatory protein RecX -
  MHI52_RS11895 (MHI52_11890) rny 2617583..2619124 (+) 1542 WP_036670418.1 ribonuclease Y -
  MHI52_RS11900 (MHI52_11895) - 2619278..2620072 (+) 795 WP_036609256.1 TIGR00282 family metallophosphoesterase -
  MHI52_RS11905 (MHI52_11900) - 2620190..2620450 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38306.68 Da        Isoelectric Point: 5.0928

>NTDB_id=969814 MHI52_RS11885 WP_036609261.1 2615188..2616252(+) (recA) [Paenibacillus sp. FSL H8-0283]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMNVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRAGGQAAFIDAEHALDPQYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDMIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHKDIADIIEQK
IRVASNLVTAVPAPTSEEQQKEAAEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=969814 MHI52_RS11885 WP_036609261.1 2615188..2616252(+) (recA) [Paenibacillus sp. FSL H8-0283]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGATCCATCATGAAACT
GGGTGAGTCCACTCATATGAATGTGGAAATTATTCCCAGTGGTTCCTTGGCTTTGGATATTGCATTAGGAACAGGCGGCT
TGCCTAAAGGCCGTATTGTTGAAATATATGGACCTGAATCCTCTGGTAAAACAACCGTAGCATTGCATGCTATCGCTGAA
GTACAAAGAGCGGGTGGACAAGCTGCATTTATCGATGCCGAGCATGCTCTTGACCCACAGTACGCAAGCAAACTTGGTGT
TAATATTGATGAATTGCTTCTGTCTCAGCCAGATACGGGTGAGCAAGGGTTGGAAATTGCAGAAGCTCTTGTACGCAGTG
GTGCAGTAGATATCGTCGTTATTGACTCTGTAGCCGCATTGGTTCCAAAAGCAGAGATTGAAGGCGAAATGGGCGATTCA
CACGTTGGTTTGCAAGCGCGTTTGATGTCTCAGGCGCTGCGTAAACTGTCTGGTGCAATCAGCAAATCCAAAACAATCGC
AATCTTCATTAACCAGCTTCGTGAGAAAGTCGGCGTTATGTTTGGTAACCCGGAAACAACACCTGGTGGTCGTGCTCTGA
AGTTTTATTCCACAGTACGTCTGGATGTGCGTCGTATTGAGAGTATCAAATCAGGCAATGACATGATTGGTAACCGTACT
CGTATTAAAGTTGTGAAAAACAAAGTGGCACCTCCGTTTAAACAAGCGGAAGTGGATATCATGTATGGCGAGGGTATTTC
GAGAGAAGGCAGTATCATTGACATTGGTACAGAGCTGGACATCGTTAATAAAAGTGGTGCTTGGTACTCCTACGAAGGCG
AGCGTTTAGGACAAGGTCGTGAGAACGCAAAGCAGTTCATGAAAGAGCATAAAGATATTGCTGACATCATTGAACAAAAA
ATTCGTGTAGCCAGTAACTTGGTTACTGCAGTTCCTGCGCCAACGAGTGAAGAGCAACAAAAAGAAGCAGCAGAAGAACA
AGAATTGTTTGAAATCAACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.851

90.96

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

73.021

96.328

0.703
  recA Streptococcus mutans UA159

65

100

0.661
  recA Streptococcus pneumoniae D39

65.169

100

0.655
  recA Streptococcus pneumoniae Rx1

65.169

100

0.655
  recA Streptococcus pneumoniae R6

65.169

100

0.655
  recA Streptococcus pneumoniae TIGR4

65.169

100

0.655
  recA Streptococcus mitis NCTC 12261

66.092

98.305

0.65
  recA Streptococcus pyogenes NZ131

70.462

91.808

0.647
  recA Lactococcus lactis subsp. cremoris KW2

68.882

93.503

0.644
  recA Streptococcus mitis SK321

65.889

96.893

0.638
  recA Neisseria gonorrhoeae strain FA1090

64.671

94.35

0.61
  recA Neisseria gonorrhoeae MS11

64.671

94.35

0.61
  recA Neisseria gonorrhoeae MS11

64.671

94.35

0.61
  recA Acinetobacter baylyi ADP1

60.511

99.435

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.25

90.395

0.599
  recA Vibrio cholerae strain A1552

66.25

90.395

0.599
  recA Pseudomonas stutzeri DSM 10701

62.242

95.763

0.596
  recA Glaesserella parasuis strain SC1401

60.114

99.153

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.526

92.373

0.596
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.006

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.863

90.678

0.579
  recA Helicobacter pylori 26695

62.691

92.373

0.579
  recA Helicobacter pylori strain NCTC11637

62.385

92.373

0.576
  recA Acinetobacter baumannii D1279779

63.438

90.395

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment