Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHI43_RS20870 Genome accession   NZ_CP150293
Coordinates   4711943..4713004 (-) Length   353 a.a.
NCBI ID   WP_015736279.1    Uniprot ID   A0A385TIT5
Organism   Paenibacillus sp. FSL H8-0457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4706943..4718004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI43_RS20850 (MHI43_20850) - 4707826..4708086 (-) 261 WP_006211249.1 stage V sporulation protein S -
  MHI43_RS20855 (MHI43_20855) - 4708216..4709019 (-) 804 WP_009589304.1 TIGR00282 family metallophosphoesterase -
  MHI43_RS20860 (MHI43_20860) rny 4709159..4710700 (-) 1542 WP_009589303.1 ribonuclease Y -
  MHI43_RS20865 (MHI43_20865) - 4711066..4711803 (-) 738 WP_036659265.1 RecX family transcriptional regulator -
  MHI43_RS20870 (MHI43_20870) recA 4711943..4713004 (-) 1062 WP_015736279.1 recombinase RecA Machinery gene
  MHI43_RS20875 (MHI43_20875) - 4713292..4714554 (-) 1263 WP_036659261.1 competence/damage-inducible protein A -
  MHI43_RS20880 (MHI43_20880) pgsA 4714657..4715244 (-) 588 WP_009589313.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI43_RS20885 (MHI43_20885) - 4715509..4716000 (-) 492 WP_009589306.1 YajQ family cyclic di-GMP-binding protein -
  MHI43_RS20890 (MHI43_20890) - 4716152..4716325 (-) 174 WP_009589315.1 hypothetical protein -
  MHI43_RS20895 (MHI43_20895) - 4716402..4717415 (-) 1014 WP_036659260.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38234.60 Da        Isoelectric Point: 5.0035

>NTDB_id=969767 MHI43_RS20870 WP_015736279.1 4711943..4713004(-) (recA) [Paenibacillus sp. FSL H8-0457]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEIVPSGSLALDIALGTGGLPRGRIIEVYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT
RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQGRENAKQFLKENPEIASVIENK
IREASNLTTAVPEPSDKEKEQEQLEEQELFKVE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=969767 MHI43_RS20870 WP_015736279.1 4711943..4713004(-) (recA) [Paenibacillus sp. FSL H8-0457]
TTGTCAGATCGTCGTGCTGCGCTGGAAATGGCGCTTCGTCAGATAGAGAAACAGTTCGGAAAAGGTTCCATCATGAAACT
GGGTGAATCCACCCATATGCAAGTTGAGATTGTGCCAAGCGGATCGTTGGCATTGGATATAGCTTTAGGAACCGGCGGCT
TGCCTAGAGGCCGGATTATCGAAGTGTACGGCCCGGAATCCTCCGGTAAAACAACAGTAGCCCTGCATGCCATCGCAGAG
GTTCAGAAGGCTGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCTCTGGATCCATCGTATGCAAACAAACTGGGCGT
TAATATTGATGAATTGCTGCTCTCCCAACCGGATACGGGCGAGCAGGCGCTGGAAATTGCGGAAGCTCTGGTACGGAGTG
GAGCCGTCGATGTCATCGTTATTGACTCGGTTGCCGCGCTTGTACCGAAAGCCGAGATCGAAGGCGACATGGGTGATTCC
CACGTAGGTCTGCAAGCCCGTCTGATGTCCCAGGCTCTTCGTAAATTGTCGGGTGCCATCAATAAGTCGAAAACGATTGC
CATCTTTATCAACCAGCTTCGCGAGAAGGTTGGCGTTATGTTCGGTAACCCTGAAACAACCCCAGGCGGACGTGCTCTGA
AGTTCTATTCCACGGTTCGTTTGGACGTGCGTCGAATTGAGAGCATCAAAATGGGCAACGATGTGGTGGGTAACCGCACA
CGGATTAAGGTTGTTAAGAACAAGGTAGCTCCACCTTTCAAACAGGCCGAGCTTGATATTATGTACGGCGAAGGCATCTC
TAGAGAGGGAAGCCTGATCGATATCGGTACGGAGCTGGATATCGTGGATAAAAGCGGAGCATGGTATTCTTATGCCGGTG
ACCGTCTTGGTCAAGGCCGCGAGAATGCGAAGCAGTTCTTGAAGGAGAATCCGGAGATCGCCAGCGTGATCGAGAACAAG
ATCCGTGAAGCGAGTAATCTGACGACGGCTGTTCCTGAGCCTTCCGACAAGGAGAAGGAACAAGAGCAATTGGAAGAGCA
AGAGTTGTTTAAGGTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385TIT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.486

92.635

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

96.884

0.686
  recA Streptococcus mutans UA159

65.537

100

0.657
  recA Streptococcus pneumoniae R6

69.091

93.484

0.646
  recA Streptococcus pneumoniae TIGR4

69.091

93.484

0.646
  recA Streptococcus pneumoniae Rx1

69.091

93.484

0.646
  recA Streptococcus pneumoniae D39

69.091

93.484

0.646
  recA Streptococcus mitis NCTC 12261

69.846

92.068

0.643
  recA Streptococcus mitis SK321

69.538

92.068

0.64
  recA Streptococcus pyogenes NZ131

69.444

91.785

0.637
  recA Neisseria gonorrhoeae MS11

64.928

97.734

0.635
  recA Neisseria gonorrhoeae MS11

64.928

97.734

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.928

97.734

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.97

93.484

0.626
  recA Glaesserella parasuis strain SC1401

62.393

99.433

0.62
  recA Vibrio cholerae strain A1552

68.224

90.935

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.224

90.935

0.62
  recA Ralstonia pseudosolanacearum GMI1000

68.79

88.952

0.612
  recA Acinetobacter baylyi ADP1

61.782

98.584

0.609
  recA Acinetobacter baumannii D1279779

62.941

96.317

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

96.317

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.635

0.589
  recA Pseudomonas stutzeri DSM 10701

63.415

92.918

0.589
  recA Helicobacter pylori 26695

60.641

97.167

0.589
  recA Helicobacter pylori strain NCTC11637

60.35

97.167

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.501

0.569

Multiple sequence alignment