Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSQ62_RS04630 Genome accession   NZ_CP150291
Coordinates   987723..988802 (+) Length   359 a.a.
NCBI ID   WP_341322758.1    Uniprot ID   -
Organism   Solibacillus sp. FSL H8-0523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982723..993802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ62_RS04605 (NSQ62_04605) - 982945..983202 (+) 258 WP_341322753.1 DUF3243 domain-containing protein -
  NSQ62_RS04610 (NSQ62_04610) - 983559..984356 (+) 798 WP_341322754.1 DUF3388 domain-containing protein -
  NSQ62_RS04615 (NSQ62_04615) - 984419..985312 (+) 894 WP_341322755.1 helix-turn-helix domain-containing protein -
  NSQ62_RS04620 (NSQ62_04620) pgsA 985361..985939 (+) 579 WP_341322756.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ62_RS04625 (NSQ62_04625) cinA 986301..987557 (+) 1257 WP_341322757.1 competence/damage-inducible protein A Machinery gene
  NSQ62_RS04630 (NSQ62_04630) recA 987723..988802 (+) 1080 WP_341322758.1 recombinase RecA Machinery gene
  NSQ62_RS04635 (NSQ62_04635) rny 989114..990667 (+) 1554 WP_341322759.1 ribonuclease Y -
  NSQ62_RS04640 (NSQ62_04640) - 990952..992715 (+) 1764 WP_341322760.1 S-layer homology domain-containing protein -
  NSQ62_RS04645 (NSQ62_04645) - 992800..993600 (+) 801 WP_341322761.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38797.12 Da        Isoelectric Point: 5.0167

>NTDB_id=969690 NSQ62_RS04630 WP_341322758.1 987723..988802(+) (recA) [Solibacillus sp. FSL H8-0523]
MSDRKAALDMALKQIEKQFGKGSVMKLGENSDRKIDTTSSGSIALDAALGVGGYPRGRIVEVYGPESSGKTTVTLHAIAE
IQRNGGTAAFIDAEHALDPVYAQKLGVNIDELLLAQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQIREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGQGISKEGEIVDIGAELEIIQKSGSWYSYNNERIGQGRENVKAYLKENPAVREEIAEK
IRQNFGIGGDIGYTIGAHDAAEEEDGELELDLLVDKDKK

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=969690 NSQ62_RS04630 WP_341322758.1 987723..988802(+) (recA) [Solibacillus sp. FSL H8-0523]
TTGAGCGATCGTAAAGCAGCATTAGACATGGCGTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCTGTCATGAAGTT
GGGTGAAAATTCAGACCGCAAAATCGATACAACATCATCAGGGTCAATCGCACTTGATGCAGCATTAGGTGTGGGCGGTT
ATCCACGTGGACGTATTGTAGAAGTCTATGGTCCAGAGTCTTCTGGTAAAACAACAGTTACATTACATGCCATTGCAGAA
ATTCAAAGAAATGGTGGTACAGCAGCGTTTATCGATGCTGAGCACGCATTAGACCCAGTATACGCGCAAAAACTAGGCGT
TAATATTGACGAACTATTATTAGCACAGCCAGATACGGGTGAACAAGCGCTTGAAATCGCGGAAGCATTAGTACGTTCAG
GTGCGATTGATATTATCGTTATTGACTCAGTAGCAGCGTTAGTACCAAAAGCAGAGATTGAAGGCGAAATGGGTGACTCA
CATATGGGTCTTCAAGCGCGTTTAATGTCTCAAGCATTACGTAAATTATCAGGTGTTATTAACAAATCAAATACACTTGC
GATCTTCATCAACCAAATCCGTGAAAAAATCGGTGTTATGTTCGGTAATCCTGAAACAACGACTGGTGGTCGTGCGTTAA
AATTCTATTCATCGATTCGTTTAGAAGTACGTCGCGGTGAAGCGATTAAGCAAGGCACAGAAATTGTTGGTAACAAAACA
AAAATTAAAGTTGTAAAAAATAAAGTAGCACCACCATTCCGTACAGCAGAAGTTGATATTATGTATGGCCAGGGGATTTC
TAAAGAAGGGGAAATCGTTGATATTGGTGCTGAATTAGAAATTATTCAAAAGAGTGGTTCTTGGTATTCGTATAACAACG
AACGAATCGGTCAGGGTCGTGAGAATGTTAAAGCTTACTTAAAAGAAAACCCAGCAGTTCGTGAAGAAATTGCTGAAAAA
ATCCGACAAAACTTTGGTATCGGTGGCGACATTGGCTATACAATCGGTGCACATGATGCAGCTGAAGAAGAAGACGGCGA
ATTAGAATTAGATTTATTAGTAGATAAAGATAAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.04

91.086

0.738
  recA Latilactobacillus sakei subsp. sakei 23K

72.923

90.529

0.66
  recA Streptococcus pyogenes NZ131

64.689

98.607

0.638
  recA Neisseria gonorrhoeae MS11

65.33

97.214

0.635
  recA Neisseria gonorrhoeae MS11

65.33

97.214

0.635
  recA Neisseria gonorrhoeae strain FA1090

65.33

97.214

0.635
  recA Acinetobacter baylyi ADP1

63.429

97.493

0.618
  recA Acinetobacter baumannii D1279779

62.04

98.329

0.61
  recA Streptococcus mutans UA159

66.565

91.643

0.61
  recA Streptococcus mitis SK321

66.061

91.922

0.607
  recA Ralstonia pseudosolanacearum GMI1000

66.261

91.643

0.607
  recA Streptococcus pneumoniae D39

65.758

91.922

0.604
  recA Streptococcus mitis NCTC 12261

65.758

91.922

0.604
  recA Streptococcus pneumoniae Rx1

65.758

91.922

0.604
  recA Streptococcus pneumoniae R6

65.758

91.922

0.604
  recA Streptococcus pneumoniae TIGR4

65.758

91.922

0.604
  recA Lactococcus lactis subsp. cremoris KW2

65.152

91.922

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

89.415

0.596
  recA Vibrio cholerae strain A1552

66.667

89.415

0.596
  recA Glaesserella parasuis strain SC1401

61.628

95.822

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

95.543

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

91.643

0.579
  recA Pseudomonas stutzeri DSM 10701

65

89.136

0.579
  recA Helicobacter pylori strain NCTC11637

63.077

90.529

0.571
  recA Helicobacter pylori 26695

62.769

90.529

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

89.136

0.554

Multiple sequence alignment