Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OO773_RS07990 Genome accession   NZ_AP026769
Coordinates   1448429..1449454 (-) Length   341 a.a.
NCBI ID   WP_006564451.1    Uniprot ID   -
Organism   Helicobacter suis HS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443429..1454454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS07960 (HSHS1_15730) - 1443556..1444194 (-) 639 WP_264828529.1 class II aldolase/adducin family protein -
  OO773_RS07965 (HSHS1_15740) - 1444191..1445039 (-) 849 WP_006564455.1 ATP-binding cassette domain-containing protein -
  OO773_RS07970 (HSHS1_15750) - 1445049..1445930 (-) 882 WP_231102797.1 RNA pseudouridine synthase -
  OO773_RS07975 (HSHS1_15760) pyrG 1445930..1447504 (-) 1575 WP_319952018.1 glutamine hydrolyzing CTP synthase -
  OO773_RS07980 (HSHS1_15770) - 1447579..1448175 (-) 597 WP_034376921.1 AMIN domain-containing protein -
  OO773_RS07985 (HSHS1_15780) - 1448186..1448428 (-) 243 WP_034376919.1 hypothetical protein -
  OO773_RS07990 (HSHS1_15790) recA 1448429..1449454 (-) 1026 WP_006564451.1 recombinase RecA Machinery gene
  OO773_RS07995 - 1449592..1449720 (+) 129 WP_255298804.1 hypothetical protein -
  OO773_RS08000 (HSHS1_15800) thrS 1449744..1451549 (+) 1806 WP_006564449.1 threonine--tRNA ligase -
  OO773_RS08005 (HSHS1_15810) infC 1451546..1452061 (+) 516 WP_006564448.1 translation initiation factor IF-3 -
  OO773_RS08010 (HSHS1_15820) rpmI 1452084..1452278 (+) 195 WP_006565320.1 50S ribosomal protein L35 -
  OO773_RS08015 (HSHS1_15830) rplT 1452351..1452713 (+) 363 WP_006564446.1 50S ribosomal protein L20 -
  OO773_RS08020 (HSHS1_15840) - 1452927..1453778 (+) 852 WP_006564445.1 outer membrane protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37091.58 Da        Isoelectric Point: 5.5141

>NTDB_id=96893 OO773_RS07990 WP_006564451.1 1448429..1449454(-) (recA) [Helicobacter suis HS1]
MDEQKQKALELAIKQIDKQFGKGALMRLGDKEVEHIEVTSTGSLGLDMALGIGGVPKGRIVEVYGPESSGKTTLTLHIIA
QAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGEEALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGD
QHVGLQARLMSQALRKITGILHKMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGN
RVRVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGREAAKLSLKNDGDLATEIA
GKIKEKLFDKSDVEWAMPEGE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=96893 OO773_RS07990 WP_006564451.1 1448429..1449454(-) (recA) [Helicobacter suis HS1]
GTGGACGAACAAAAACAAAAGGCGTTAGAGTTAGCAATTAAACAGATTGATAAACAATTTGGTAAGGGGGCGCTGATGCG
TTTGGGCGATAAAGAAGTTGAACACATTGAGGTCACCTCTACCGGATCGCTAGGTTTGGATATGGCTTTAGGGATTGGAG
GCGTGCCTAAGGGGCGCATTGTAGAAGTTTATGGACCAGAATCAAGCGGGAAAACCACCTTGACCTTGCATATCATCGCG
CAAGCACAAAGAGAGGGGGGAACTTGTGCCTTTATTGATGCCGAGCATGCTTTAGATGTGCAGTATGCCAAAAAATTAGG
GGTGGATACAGATAATCTACTCATTTCTCAGCCAGATACCGGAGAAGAAGCCCTAGAAATTTTAGAGACCTTAGCGCGTA
GCGGGGCGGTAGATGTGATTGTGGTAGATTCAGTAGCCGCGCTCACCCCCCGTGCAGAAATTGAAGGCGACATGGGCGAT
CAACATGTAGGTTTGCAGGCGCGTTTAATGAGTCAGGCCTTGCGCAAGATCACCGGAATTTTACACAAGATGAATACCAC
CTTAATTTTTATCAACCAGATTCGCATGAAAATTGGGACTATGGGTTATGGAAGTCCTGAGACCACCACAGGGGGCAATG
CCTTAAAGTTTTATGCCAGTGTACGCATAGACATCCGCCGCATTGCTACTCTTAAACAAAACGAACACCCCATTGGTAAT
CGCGTAAGAGTCAAGGTGGTTAAAAATAAAGTAGCGCCCCCTTTTAAAGAGGCAGAGTTTGATATTATGTATGGAGATGG
AATTAGCCAAGCGGGGGAATTGATTGACTATGGTGTTAAGCTAGAGGTGATAGAAAAAAGCGGGGCGTGGTTTAGCTATT
TGGATAAGAAATTAGGGCAGGGGAGAGAGGCGGCTAAGTTAAGCTTAAAAAATGACGGGGATTTAGCAACAGAGATTGCC
GGTAAAATTAAAGAAAAACTTTTTGATAAGTCTGATGTAGAGTGGGCTATGCCAGAAGGGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

78.107

99.12

0.774
  recA Helicobacter pylori strain NCTC11637

78.107

99.12

0.774
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.535

95.894

0.724
  recA Acinetobacter baylyi ADP1

64.912

100

0.651
  recA Pseudomonas stutzeri DSM 10701

64.809

100

0.648
  recA Vibrio cholerae strain A1552

65.569

97.947

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.569

97.947

0.642
  recA Acinetobacter baumannii D1279779

65.549

96.188

0.631
  recA Glaesserella parasuis strain SC1401

65.538

95.308

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.554

97.361

0.619
  recA Neisseria gonorrhoeae MS11

64.615

95.308

0.616
  recA Neisseria gonorrhoeae strain FA1090

64.615

95.308

0.616
  recA Neisseria gonorrhoeae MS11

64.615

95.308

0.616
  recA Ralstonia pseudosolanacearum GMI1000

66.667

91.496

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

94.135

0.598
  recA Lactococcus lactis subsp. cremoris KW2

58.036

98.534

0.572
  recA Streptococcus pyogenes NZ131

58.967

96.481

0.569
  recA Streptococcus pneumoniae D39

58.537

96.188

0.563
  recA Streptococcus pneumoniae Rx1

58.537

96.188

0.563
  recA Streptococcus pneumoniae R6

58.537

96.188

0.563
  recA Streptococcus pneumoniae TIGR4

58.537

96.188

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

59.627

94.428

0.563
  recA Streptococcus mitis SK321

58.462

95.308

0.557
  recA Streptococcus mitis NCTC 12261

58.462

95.308

0.557
  recA Streptococcus mutans UA159

57.975

95.601

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.252

88.563

0.551

Multiple sequence alignment