Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY63_RS23065 Genome accession   NZ_CP150223
Coordinates   5261486..5262550 (+) Length   354 a.a.
NCBI ID   WP_036688391.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0189     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5256486..5267550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY63_RS23040 (MKY63_23040) - 5257187..5258104 (+) 918 WP_076316351.1 RodZ domain-containing protein -
  MKY63_RS23045 (MKY63_23045) - 5258184..5258345 (+) 162 WP_169744781.1 hypothetical protein -
  MKY63_RS23050 (MKY63_23050) - 5258556..5259047 (+) 492 WP_036688400.1 YajQ family cyclic di-GMP-binding protein -
  MKY63_RS23055 (MKY63_23055) pgsA 5259203..5259790 (+) 588 WP_036688397.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY63_RS23060 (MKY63_23060) - 5259899..5261185 (+) 1287 WP_339809861.1 competence/damage-inducible protein A -
  MKY63_RS23065 (MKY63_23065) recA 5261486..5262550 (+) 1065 WP_036688391.1 recombinase RecA Machinery gene
  MKY63_RS23070 (MKY63_23070) - 5262661..5263386 (+) 726 WP_076316353.1 RecX family transcriptional regulator -
  MKY63_RS23075 (MKY63_23075) rny 5263706..5265247 (+) 1542 WP_036689085.1 ribonuclease Y -
  MKY63_RS23080 (MKY63_23080) - 5265459..5266253 (+) 795 WP_076100408.1 TIGR00282 family metallophosphoesterase -
  MKY63_RS23085 (MKY63_23085) - 5266453..5266713 (+) 261 WP_019910496.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38325.77 Da        Isoelectric Point: 4.9127

>NTDB_id=966864 MKY63_RS23065 WP_036688391.1 5261486..5262550(+) (recA) [Paenibacillus sp. FSL R7-0189]
MSDRRAALDMALRQIEKQFGKGSVMKLGESTHMQVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPKYARNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRT
KIKIVKNKVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENAKQFLKEHQDIALIIENK
IREASNLSTIVAAPNNDEIVAEQEEEEKLLLEIE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=966864 MKY63_RS23065 WP_036688391.1 5261486..5262550(+) (recA) [Paenibacillus sp. FSL R7-0189]
TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGGTAATGAAACT
GGGAGAATCCACGCATATGCAAGTGGAAGTTGTACCTAGCGGATCTTTGGCACTTGATATTGCGTTAGGTATAGGCGGAC
TTCCAAAGGGACGTATTATTGAAGTATACGGACCGGAATCTTCAGGTAAAACAACAGTTGCTCTTCATGCTATTGCAGAA
GTGCAAAGACAAGGCGGACAAGCTGCTTTTATCGATGCCGAGCATGCGCTTGATCCGAAATATGCACGTAACTTGGGCGT
AAACATCGATGAATTGCTGCTTTCTCAGCCAGATACGGGTGAACAAGCGCTGGAAATCGCCGAAGCACTTGTTCGTAGTG
GAGCCGTTGACATTATTGTCGTTGACTCCGTTGCTGCTTTGGTACCTAAGGCTGAAATTGAAGGCGATATGGGTGATTCC
CACGTCGGACTGCAAGCTCGTTTGATGTCTCAAGCACTTCGTAAGCTTTCTGGTGCCATTAGCAAATCGAATACGATTGC
TATCTTTATCAACCAGCTTCGTGAGAAGATCGGTGTTATGTTCGGTAACCCTGAGACAACTCCGGGTGGTCGTGCATTGA
AATTCTACTCCTCTGTACGTTTAGATGTACGTCGCGTAGAGAGCATCAAGATGGGCAACGATGTGGTTGGTAACCGTACT
AAGATCAAGATTGTGAAGAATAAAGTAGCCCCTCCATTTAAACAGGCTGATGTTGATATCATGTATGGTGAAGGGATTTC
CAAAGAGGGAAGTCTTGTAGATATCGGTACTGAAATGGATATCGTGAATAAGAGTGGTGCATGGTATTCCTACGAAGGCG
AGCGTCTCGGTCAAGGTCGTGAGAATGCTAAGCAGTTTTTGAAGGAACATCAGGATATTGCCCTTATTATTGAGAATAAG
ATCCGTGAAGCAAGTAATTTATCCACTATTGTTGCTGCGCCGAATAATGATGAGATTGTTGCAGAGCAAGAGGAAGAAGA
AAAATTGCTCCTCGAAATCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.373

0.777
  recA Latilactobacillus sakei subsp. sakei 23K

70.262

96.893

0.681
  recA Streptococcus pneumoniae D39

66.952

99.153

0.664
  recA Streptococcus pneumoniae Rx1

66.952

99.153

0.664
  recA Streptococcus pneumoniae R6

66.952

99.153

0.664
  recA Streptococcus pneumoniae TIGR4

66.952

99.153

0.664
  recA Streptococcus mutans UA159

64.365

100

0.658
  recA Streptococcus pyogenes NZ131

70.062

91.525

0.641
  recA Streptococcus mitis NCTC 12261

69.231

91.808

0.636
  recA Lactococcus lactis subsp. cremoris KW2

67.879

93.22

0.633
  recA Streptococcus mitis SK321

68.923

91.808

0.633
  recA Acinetobacter baumannii D1279779

63.429

98.87

0.627
  recA Glaesserella parasuis strain SC1401

62.393

99.153

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.824

96.045

0.613
  recA Vibrio cholerae strain A1552

63.824

96.045

0.613
  recA Acinetobacter baylyi ADP1

61.473

99.718

0.613
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.35

0.607
  recA Ralstonia pseudosolanacearum GMI1000

65.231

91.808

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.908

95.198

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

92.373

0.59
  recA Pseudomonas stutzeri DSM 10701

63.75

90.395

0.576
  recA Helicobacter pylori 26695

62.848

91.243

0.573
  recA Helicobacter pylori strain NCTC11637

62.539

91.243

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.243

0.565

Multiple sequence alignment