Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY23_RS11405 Genome accession   NZ_CP150221
Coordinates   2562009..2563073 (+) Length   354 a.a.
NCBI ID   WP_336122386.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2557009..2568073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY23_RS11380 (MKY23_11380) - 2557536..2558618 (+) 1083 WP_154886337.1 RodZ family helix-turn-helix domain-containing protein -
  MKY23_RS11385 (MKY23_11385) - 2558692..2558856 (+) 165 WP_167375816.1 hypothetical protein -
  MKY23_RS11390 (MKY23_11390) - 2559006..2559497 (+) 492 WP_090923812.1 YajQ family cyclic di-GMP-binding protein -
  MKY23_RS11395 (MKY23_11395) pgsA 2559815..2560402 (+) 588 WP_090923811.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY23_RS11400 (MKY23_11400) - 2560512..2561768 (+) 1257 WP_154983872.1 competence/damage-inducible protein A -
  MKY23_RS11405 (MKY23_11405) recA 2562009..2563073 (+) 1065 WP_336122386.1 recombinase RecA Machinery gene
  MKY23_RS11410 (MKY23_11410) - 2563292..2564029 (+) 738 WP_336122813.1 RecX family transcriptional regulator -
  MKY23_RS11415 (MKY23_11415) rny 2564341..2565882 (+) 1542 WP_090923808.1 ribonuclease Y -
  MKY23_RS11420 (MKY23_11420) - 2565963..2566757 (+) 795 WP_090923807.1 TIGR00282 family metallophosphoesterase -
  MKY23_RS11425 (MKY23_11425) - 2566875..2567135 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38295.55 Da        Isoelectric Point: 4.9334

>NTDB_id=966792 MKY23_RS11405 WP_336122386.1 2562009..2563073(+) (recA) [Paenibacillus sp. FSL R7-0272]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMNVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRVGGQAAFIDAEHALDPNYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDITGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHKEIADVIEQK
IREASNLTTAVPAPSSEEQEKEAAEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=966792 MKY23_RS11405 WP_336122386.1 2562009..2563073(+) (recA) [Paenibacillus sp. FSL R7-0272]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGTTCCATCATGAAATT
GGGTGAGTCAACTCATATGAATGTGGAAATAATTCCCAGCGGATCTTTGGCTTTGGATATTGCATTAGGAACAGGCGGCT
TGCCGAAAGGCCGTATTGTTGAAATATATGGACCTGAATCTTCAGGTAAAACAACTGTGGCATTGCATGCCATTGCTGAA
GTCCAACGTGTAGGTGGACAAGCTGCGTTTATCGATGCTGAGCATGCGCTTGATCCGAATTATGCAAGCAAACTGGGCGT
TAACATTGATGAATTGCTCTTGTCACAACCGGATACAGGTGAGCAAGGATTGGAAATCGCCGAGGCTCTTGTACGCAGTG
GTGCAGTAGACATCATTGTTATTGACTCGGTAGCAGCGCTTGTACCAAAAGCGGAGATTGAAGGAGAGATGGGAGATTCT
CACGTTGGTCTGCAGGCTCGTTTGATGTCTCAGGCACTCCGTAAATTGTCCGGTGCAATCAGTAAGTCTAAAACGATTGC
CATCTTCATCAACCAGCTTCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCGGAAACGACACCAGGTGGCCGCGCATTAA
AGTTCTATTCCACGGTTCGTCTAGATGTACGCCGTATTGAGAGTATCAAATCGGGAAATGACATTACAGGTAACCGTACC
CGTATTAAAGTTGTTAAAAATAAAGTGGCACCTCCGTTCAAACAAGCGGAAGTTGACATTATGTATGGTGAAGGTATTTC
CAAAGAGGGAAGTATCATCGATATCGGTACAGAGCTGGATATCGTCAACAAAAGCGGTGCTTGGTATTCGTATGAAGGTG
AACGTTTAGGGCAAGGCCGTGAGAACGCGAAGCAGTTTATGAAAGAACATAAAGAAATTGCTGATGTGATTGAGCAGAAA
ATTCGTGAAGCCAGCAATTTGACAACGGCTGTTCCTGCTCCATCGAGTGAAGAGCAAGAAAAAGAAGCGGCTGAAGAACA
GGAATTATTCGAAATTAATGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.373

0.766
  recA Latilactobacillus sakei subsp. sakei 23K

71.261

96.328

0.686
  recA Streptococcus mutans UA159

64.444

100

0.655
  recA Streptococcus pneumoniae TIGR4

69.091

93.22

0.644
  recA Streptococcus pneumoniae R6

69.091

93.22

0.644
  recA Streptococcus pneumoniae Rx1

69.091

93.22

0.644
  recA Streptococcus pneumoniae D39

69.091

93.22

0.644
  recA Streptococcus mitis SK321

66.181

96.893

0.641
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.22

0.641
  recA Streptococcus mitis NCTC 12261

69.231

91.808

0.636
  recA Streptococcus pyogenes NZ131

69.444

91.525

0.636
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.35

0.607
  recA Vibrio cholerae strain A1552

66.667

90.678

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

90.678

0.605
  recA Ralstonia pseudosolanacearum GMI1000

65.244

92.655

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

92.655

0.602
  recA Acinetobacter baylyi ADP1

60.511

99.435

0.602
  recA Acinetobacter baumannii D1279779

62.059

96.045

0.596
  recA Glaesserella parasuis strain SC1401

60.87

97.458

0.593
  recA Helicobacter pylori 26695

60.933

96.893

0.59
  recA Pseudomonas stutzeri DSM 10701

63.415

92.655

0.588
  recA Helicobacter pylori strain NCTC11637

60.641

96.893

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.588

96.045

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

90.96

0.548

Multiple sequence alignment