Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSQ38_RS24390 Genome accession   NZ_CP150219
Coordinates   5625965..5627029 (-) Length   354 a.a.
NCBI ID   WP_062833851.1    Uniprot ID   A0A117I0S2
Organism   Paenibacillus sp. FSL R7-0313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5620965..5632029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ38_RS24370 (NSQ38_24370) - 5621767..5622027 (-) 261 WP_007430104.1 stage V sporulation protein S -
  NSQ38_RS24375 (NSQ38_24375) - 5622145..5622939 (-) 795 WP_339784523.1 TIGR00282 family metallophosphoesterase -
  NSQ38_RS24380 (NSQ38_24380) rny 5623094..5624635 (-) 1542 WP_036609258.1 ribonuclease Y -
  NSQ38_RS24385 (NSQ38_24385) - 5624946..5625683 (-) 738 WP_339784526.1 regulatory protein RecX -
  NSQ38_RS24390 (NSQ38_24390) recA 5625965..5627029 (-) 1065 WP_062833851.1 recombinase RecA Machinery gene
  NSQ38_RS24395 (NSQ38_24395) - 5627274..5628530 (-) 1257 WP_091017238.1 competence/damage-inducible protein A -
  NSQ38_RS24400 (NSQ38_24400) pgsA 5628638..5629225 (-) 588 WP_062833849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ38_RS24405 (NSQ38_24405) - 5629546..5630037 (-) 492 WP_017689115.1 YajQ family cyclic di-GMP-binding protein -
  NSQ38_RS24410 (NSQ38_24410) - 5630193..5630357 (-) 165 WP_167350848.1 hypothetical protein -
  NSQ38_RS24415 (NSQ38_24415) - 5630431..5631483 (-) 1053 WP_339784528.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38408.77 Da        Isoelectric Point: 5.0076

>NTDB_id=966744 NSQ38_RS24390 WP_062833851.1 5625965..5627029(-) (recA) [Paenibacillus sp. FSL R7-0313]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMNVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRVGGQAAFIDAEHALDPQYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDMIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHKDIAEIIEQK
IRVASNLTTAVPAPTSEEQQKEAEEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=966744 NSQ38_RS24390 WP_062833851.1 5625965..5627029(-) (recA) [Paenibacillus sp. FSL R7-0313]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGATCCATCATGAAACT
GGGTGAGTCCACTCATATGAATGTGGAAATTATTCCCAGCGGTTCCTTGGCTTTGGATATTGCATTAGGAACAGGCGGCT
TGCCTAAAGGCCGTATTGTTGAAATATATGGACCTGAATCCTCAGGTAAAACAACTGTCGCATTGCATGCGATTGCCGAA
GTACAACGTGTTGGTGGACAAGCAGCATTTATCGATGCCGAGCATGCTCTTGATCCTCAATATGCAAGCAAATTGGGCGT
TAACATTGACGAATTGCTTCTATCTCAGCCAGATACGGGTGAGCAAGGGCTGGAAATTGCAGAAGCTCTTGTGCGCAGTG
GTGCAGTAGATATCGTCGTTATTGACTCTGTAGCCGCATTGGTTCCAAAAGCAGAGATTGAAGGCGAAATGGGAGATTCA
CACGTTGGTTTGCAAGCGCGTTTGATGTCTCAGGCGCTGCGTAAATTGTCTGGTGCAATCAGCAAATCCAAAACAATCGC
AATCTTCATTAACCAGCTTCGTGAGAAAGTCGGCGTTATGTTTGGTAACCCGGAAACAACACCTGGTGGTCGTGCTCTGA
AGTTTTATTCCACAGTACGTCTGGATGTGCGTCGTATTGAGAGTATCAAATCAGGCAATGACATGATTGGTAACCGTACT
CGTATTAAAGTTGTGAAAAACAAAGTGGCACCTCCGTTTAAACAAGCGGAAGTGGATATCATGTATGGCGAGGGTATTTC
GAGAGAAGGCAGTATCATTGACATTGGTACAGAGCTGGACATCGTTAATAAAAGTGGTGCATGGTACTCCTACGAAGGCG
AGCGTTTAGGACAAGGCCGTGAGAACGCGAAGCAGTTCATGAAAGAGCATAAAGATATTGCTGAAATCATTGAACAAAAA
ATTCGGGTAGCTAGTAACTTGACTACCGCAGTCCCTGCGCCAACTAGTGAAGAGCAACAAAAAGAAGCAGAAGAAGAACA
AGAATTGTTTGAAATCAACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A117I0S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.851

90.96

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

72.727

96.328

0.701
  recA Streptococcus mutans UA159

66.571

98.87

0.658
  recA Streptococcus pneumoniae D39

65.242

99.153

0.647
  recA Streptococcus pneumoniae Rx1

65.242

99.153

0.647
  recA Streptococcus pneumoniae R6

65.242

99.153

0.647
  recA Streptococcus pneumoniae TIGR4

65.242

99.153

0.647
  recA Streptococcus pyogenes NZ131

70.154

91.808

0.644
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.22

0.641
  recA Streptococcus mitis SK321

65.889

96.893

0.638
  recA Streptococcus mitis NCTC 12261

68.182

93.22

0.636
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.35

0.607
  recA Acinetobacter baumannii D1279779

61.494

98.305

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

92.373

0.602
  recA Acinetobacter baylyi ADP1

60.511

99.435

0.602
  recA Vibrio cholerae strain A1552

66.25

90.395

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.25

90.395

0.599
  recA Pseudomonas stutzeri DSM 10701

62.874

94.35

0.593
  recA Glaesserella parasuis strain SC1401

60.29

97.458

0.588
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.006

0.588
  recA Helicobacter pylori 26695

62.385

92.373

0.576
  recA Helicobacter pylori strain NCTC11637

62.08

92.373

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

90.678

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

91.243

0.542

Multiple sequence alignment