Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHP_RS06995 Genome accession   NZ_AP026684
Coordinates   1323904..1324968 (-) Length   354 a.a.
NCBI ID   WP_269431078.1    Uniprot ID   -
Organism   Helicobacter heilmannii strain     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1318904..1329968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHP_RS06970 (ASB1_14720) - 1319548..1320540 (+) 993 WP_015107523.1 HoxN/HupN/NixA family nickel/cobalt transporter -
  NHP_RS06975 (ASB1_14730) - 1320532..1321410 (-) 879 WP_015107522.1 RluA family pseudouridine synthase -
  NHP_RS06980 (ASB1_14740) - 1321410..1323044 (-) 1635 WP_015107520.1 CTP synthase -
  NHP_RS06985 (ASB1_14750) - 1323066..1323650 (-) 585 WP_015107519.1 AMIN domain-containing protein -
  NHP_RS06990 (ASB1_14760) - 1323650..1323895 (-) 246 WP_015107518.1 hypothetical protein -
  NHP_RS06995 (ASB1_14770) recA 1323904..1324968 (-) 1065 WP_269431078.1 recombinase RecA Machinery gene
  NHP_RS07000 (ASB1_14780) thrS 1325240..1327045 (+) 1806 WP_015107515.1 threonine--tRNA ligase -
  NHP_RS07005 (ASB1_14790) infC 1327042..1327554 (+) 513 WP_053825327.1 translation initiation factor IF-3 -
  NHP_RS07010 (ASB1_14800) rpmI 1327574..1327765 (+) 192 WP_015107513.1 50S ribosomal protein L35 -
  NHP_RS07015 (ASB1_14810) rplT 1327852..1328202 (+) 351 WP_015107512.1 50S ribosomal protein L20 -
  NHP_RS07020 (ASB1_14820) - 1328356..1329249 (+) 894 WP_265341554.1 outer membrane protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38472.08 Da        Isoelectric Point: 5.5409

>NTDB_id=96673 NHP_RS06995 WP_269431078.1 1323904..1324968(-) (recA) [Helicobacter heilmannii strain]
MLMDEQKQKAIESAIKQIDKAFGKGALMRLGDREVEHIEGISTGSLGLDVALGIGGVPKGRIVEIYGPESSGKTTLTLHI
VAQTQKNGGACAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGEEALEILETLARTGAVDVIVVDSVAALTPRAEIEGDM
GDQHVGLQARLMSQALRKITGILHKMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQPI
GNRVRVKVVKNKVAPPFKEAEFDVMYGSGISFEGELIDYGVKLDFVEKSGAWFSYQDRKLGQGKEAAKLTLKNEPELAQE
IAKKIKDKLFERPALAEPSAPESPEPQQPSSEVD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=96673 NHP_RS06995 WP_269431078.1 1323904..1324968(-) (recA) [Helicobacter heilmannii strain]
GTGTTGATGGACGAGCAAAAACAAAAAGCGATTGAATCTGCCATTAAACAGATTGACAAAGCCTTTGGCAAGGGAGCTTT
GATGCGTCTAGGCGATCGCGAAGTCGAGCACATTGAGGGCATTTCTACGGGCTCTTTGGGGCTGGATGTGGCTTTGGGGA
TCGGGGGCGTACCTAAGGGGCGCATTGTGGAGATTTATGGGCCTGAATCTAGCGGTAAAACGACTTTAACCCTGCATATC
GTGGCGCAGACGCAAAAAAACGGGGGGGCGTGCGCCTTCATTGACGCTGAGCATGCTTTGGATGTGCAATACGCCAAAAA
ACTAGGCGTGGACACCGATAATCTTTTGATCTCTCAGCCAGACACTGGCGAGGAAGCCCTAGAGATTTTAGAGACTTTGG
CGCGCACAGGGGCGGTGGATGTGATCGTGGTCGATTCGGTGGCCGCGCTCACCCCTAGAGCTGAAATTGAGGGGGACATG
GGTGACCAGCATGTGGGCTTGCAAGCCCGCTTGATGAGCCAAGCCTTGCGTAAAATCACGGGCATTTTGCACAAGATGAA
CACGACTCTAATTTTTATCAATCAGATCCGCATGAAAATCGGTACGATGGGCTATGGCAGTCCAGAAACCACCACGGGAG
GCAATGCTTTAAAATTCTACGCCAGTGTCCGTATCGACATTCGGCGCATCGCCACGCTCAAACAAAATGAACAGCCCATT
GGCAATCGGGTACGGGTGAAGGTGGTGAAAAACAAGGTTGCCCCGCCCTTTAAGGAAGCCGAGTTTGATGTGATGTATGG
CAGCGGGATCAGCTTTGAGGGCGAGCTCATCGACTATGGCGTGAAGTTGGACTTTGTGGAAAAATCGGGGGCGTGGTTTA
GCTACCAAGACCGCAAATTAGGGCAAGGCAAAGAGGCGGCCAAACTCACACTTAAAAACGAGCCAGAGCTAGCCCAAGAG
ATTGCCAAGAAAATTAAGGATAAACTCTTTGAGCGCCCGGCTTTGGCCGAGCCTAGCGCACCTGAAAGTCCAGAGCCTCA
ACAACCCTCTAGTGAAGTGGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

75.706

100

0.757
  recA Helicobacter pylori 26695

75.706

100

0.757
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.758

92.373

0.709
  recA Vibrio cholerae strain A1552

66.159

92.655

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.159

92.655

0.613
  recA Pseudomonas stutzeri DSM 10701

65.854

92.655

0.61
  recA Neisseria gonorrhoeae MS11

66.154

91.808

0.607
  recA Neisseria gonorrhoeae MS11

66.154

91.808

0.607
  recA Neisseria gonorrhoeae strain FA1090

66.154

91.808

0.607
  recA Acinetobacter baylyi ADP1

62.682

96.893

0.607
  recA Acinetobacter baumannii D1279779

64.939

92.655

0.602
  recA Glaesserella parasuis strain SC1401

64.438

92.938

0.599
  recA Ralstonia pseudosolanacearum GMI1000

64.634

92.655

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

93.785

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

90.678

0.556
  recA Streptococcus mitis NCTC 12261

55.367

100

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

90.96

0.548
  recA Streptococcus pyogenes NZ131

58.663

92.938

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

55.46

98.305

0.545
  recA Streptococcus pneumoniae TIGR4

58.841

92.655

0.545
  recA Streptococcus pneumoniae Rx1

58.841

92.655

0.545
  recA Streptococcus pneumoniae D39

58.841

92.655

0.545
  recA Streptococcus pneumoniae R6

58.841

92.655

0.545
  recA Streptococcus mitis SK321

58.462

91.808

0.537
  recA Streptococcus mutans UA159

57.975

92.09

0.534
  recA Lactococcus lactis subsp. cremoris KW2

57.538

91.808

0.528

Multiple sequence alignment