Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY42_RS12350 Genome accession   NZ_CP150216
Coordinates   2683075..2684139 (+) Length   354 a.a.
NCBI ID   WP_090896085.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W7-1088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2678075..2689139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY42_RS12325 (MKY42_12325) - 2678638..2679678 (+) 1041 WP_090896079.1 RodZ family helix-turn-helix domain-containing protein -
  MKY42_RS12330 (MKY42_12330) - 2679746..2679916 (+) 171 WP_157258470.1 hypothetical protein -
  MKY42_RS12335 (MKY42_12335) - 2680069..2680560 (+) 492 WP_017689115.1 YajQ family cyclic di-GMP-binding protein -
  MKY42_RS12340 (MKY42_12340) pgsA 2680884..2681471 (+) 588 WP_063566359.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY42_RS12345 (MKY42_12345) - 2681579..2682835 (+) 1257 WP_090896082.1 competence/damage-inducible protein A -
  MKY42_RS12350 (MKY42_12350) recA 2683075..2684139 (+) 1065 WP_090896085.1 recombinase RecA Machinery gene
  MKY42_RS12355 (MKY42_12355) - 2684366..2685103 (+) 738 WP_090902150.1 regulatory protein RecX -
  MKY42_RS12360 (MKY42_12360) rny 2685414..2686952 (+) 1539 WP_024630288.1 ribonuclease Y -
  MKY42_RS12365 (MKY42_12365) - 2687115..2687909 (+) 795 WP_024630289.1 TIGR00282 family metallophosphoesterase -
  MKY42_RS12370 (MKY42_12370) - 2688027..2688287 (+) 261 WP_019005392.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38292.55 Da        Isoelectric Point: 4.9940

>NTDB_id=966605 MKY42_RS12350 WP_090896085.1 2683075..2684139(+) (recA) [Paenibacillus sp. FSL W7-1088]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRVGGQAAFIDAEHALDPQYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDITGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHADIAQVIEQK
IREASNLTTAVPAPTTEDQQKEAAEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=966605 MKY42_RS12350 WP_090896085.1 2683075..2684139(+) (recA) [Paenibacillus sp. FSL W7-1088]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGATCCATCATGAAACT
GGGTGAGTCTACTCACATGCAAGTGGAAATAATCCCCAGCGGTTCCTTGGCTCTGGATATTGCATTAGGAACAGGCGGCT
TGCCTAAAGGCCGTATTGTTGAAATATATGGACCAGAATCCTCCGGTAAAACAACGGTAGCGTTGCATGCGATTGCTGAA
GTACAACGGGTGGGTGGACAAGCTGCATTTATCGATGCAGAGCATGCTCTTGACCCGCAATACGCAAGCAAACTGGGTGT
TAACATTGATGAGTTGCTTCTGTCCCAGCCAGATACGGGTGAGCAAGGGCTTGAAATCGCAGAAGCGCTTGTACGTAGTG
GCGCTGTCGATATTGTCGTTATTGACTCAGTTGCTGCATTGGTACCAAAAGCGGAAATTGAAGGCGAAATGGGGGATTCC
CATGTCGGTTTGCAAGCACGTCTGATGTCTCAGGCGCTGCGTAAACTGTCTGGTGCAATCAGCAAATCCAAAACCATCGC
AATCTTTATCAACCAGCTTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCGGAGACAACACCTGGTGGTCGTGCCCTGA
AATTCTATTCTACAGTACGTCTGGATGTACGTCGTATTGAGAGTATCAAGTCAGGCAATGACATCACGGGTAACCGTACC
CGTATCAAAGTTGTGAAAAATAAAGTGGCACCACCGTTTAAACAAGCGGAAGTGGACATTATGTACGGTGAAGGTATTTC
GAGAGAAGGCAGTATCATTGACATTGGTACAGAGCTGGACATCGTTAACAAAAGTGGTGCGTGGTATTCTTACGAAGGTG
AGCGTTTAGGTCAAGGACGTGAGAACGCGAAGCAGTTCATGAAAGAGCATGCAGATATTGCTCAAGTAATTGAACAAAAA
ATTCGTGAAGCCAGCAACCTGACTACTGCAGTTCCTGCACCTACGACTGAAGATCAACAAAAAGAAGCGGCAGAAGAGCA
AGAATTATTTGAAATTAACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.373

0.766
  recA Latilactobacillus sakei subsp. sakei 23K

73.021

96.328

0.703
  recA Streptococcus pneumoniae R6

65.169

100

0.655
  recA Streptococcus pneumoniae Rx1

65.169

100

0.655
  recA Streptococcus pneumoniae D39

65.169

100

0.655
  recA Streptococcus pneumoniae TIGR4

65.169

100

0.655
  recA Streptococcus mutans UA159

64.167

100

0.653
  recA Lactococcus lactis subsp. cremoris KW2

69.091

93.22

0.644
  recA Streptococcus pyogenes NZ131

69.753

91.525

0.638
  recA Streptococcus mitis NCTC 12261

68.615

91.808

0.63
  recA Streptococcus mitis SK321

68.308

91.808

0.627
  recA Acinetobacter baylyi ADP1

60.795

99.435

0.605
  recA Vibrio cholerae strain A1552

66.355

90.678

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

90.678

0.602
  recA Neisseria gonorrhoeae MS11

63.772

94.35

0.602
  recA Neisseria gonorrhoeae MS11

63.772

94.35

0.602
  recA Neisseria gonorrhoeae strain FA1090

63.772

94.35

0.602
  recA Pseudomonas stutzeri DSM 10701

62.426

95.48

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

92.655

0.596
  recA Ralstonia pseudosolanacearum GMI1000

67.197

88.701

0.596
  recA Acinetobacter baumannii D1279779

61.652

95.763

0.59
  recA Glaesserella parasuis strain SC1401

60

97.458

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.411

96.328

0.582
  recA Helicobacter pylori 26695

62.229

91.243

0.568
  recA Helicobacter pylori strain NCTC11637

61.92

91.243

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

91.243

0.545

Multiple sequence alignment