Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYE61_RS01280 Genome accession   NZ_CP150211
Coordinates   253128..254186 (+) Length   352 a.a.
NCBI ID   WP_095308768.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 248128..259186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE61_RS01255 (NYE61_01255) - 248353..248601 (+) 249 WP_095308758.1 DUF3243 domain-containing protein -
  NYE61_RS01260 (NYE61_01260) - 248884..249675 (+) 792 WP_095308760.1 DUF3388 domain-containing protein -
  NYE61_RS01265 (NYE61_01265) - 249842..250756 (+) 915 WP_118888903.1 helix-turn-helix domain-containing protein -
  NYE61_RS01270 (NYE61_01270) pgsA 251129..251710 (+) 582 WP_095308764.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYE61_RS01275 (NYE61_01275) - 251707..252954 (+) 1248 WP_303449791.1 competence/damage-inducible protein A -
  NYE61_RS01280 (NYE61_01280) recA 253128..254186 (+) 1059 WP_095308768.1 recombinase RecA Machinery gene
  NYE61_RS01285 (NYE61_01285) rny 254614..256176 (+) 1563 WP_095308769.1 ribonuclease Y -
  NYE61_RS01290 (NYE61_01290) - 256404..257201 (+) 798 WP_095308771.1 TIGR00282 family metallophosphoesterase -
  NYE61_RS01295 (NYE61_01295) - 257306..257566 (+) 261 WP_011066027.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38000.18 Da        Isoelectric Point: 5.2118

>NTDB_id=966450 NYE61_RS01280 WP_095308768.1 253128..254186(+) (recA) [Oceanobacillus sp. FSL W7-1304]
MSDRKQALDMALRQIEKQFGKGSIMKLGENEAQKIATIPSGSLALDVALGIGGYPRGRVIEIYGPESSGKTTVALHAIAE
AQKQGGQAAFIDAEHALDPIYARALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKAGNDAVGNRA
RIKVVKNKVAPPFKQAEVDIMYGKGISKEGEILDIGSELDVVLKSGAWYSYKGERLGQGRENSKQFLLENEPIMNEIHGE
IRKHYNLDDDGTEAEGKASDSKETTEQETLDM

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=966450 NYE61_RS01280 WP_095308768.1 253128..254186(+) (recA) [Oceanobacillus sp. FSL W7-1304]
TTGAGTGATAGAAAACAAGCTTTAGATATGGCTTTGAGACAAATAGAGAAACAATTTGGTAAAGGCTCCATTATGAAACT
AGGTGAAAATGAAGCTCAGAAAATAGCAACGATACCTAGTGGATCGTTGGCATTGGATGTTGCACTAGGTATTGGTGGAT
ATCCTAGAGGAAGAGTTATTGAAATATATGGTCCGGAATCATCAGGTAAAACAACTGTGGCACTGCATGCAATCGCTGAG
GCGCAAAAGCAGGGTGGACAAGCTGCGTTTATTGATGCCGAGCATGCATTAGATCCCATTTATGCGAGAGCCTTAGGTGT
AAATATTGATGAGTTGCTTTTATCACAGCCTGACACGGGTGAGCAAGCACTAGAAATTGCTGAAGCACTTGTACGAAGTG
GTGCTGTAGATATTATCGTTGTTGACTCGGTAGCGGCCCTCGTACCAAAAGCAGAAATCGAAGGAGACATGGGAGACGCA
CATGTTGGATTACAGGCGCGACTAATGTCACAAGCATTAAGAAAGCTTTCTGGAGCAATTAATAAATCAAAAACAACAGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAGACAACACCAGGTGGACGTGCACTTA
AATTCTATTCTTCTGTTCGTTTAGAAGTACGTCGTGCAGAAACGCTAAAAGCTGGAAATGATGCGGTTGGGAATAGAGCT
AGAATTAAAGTTGTTAAAAATAAAGTCGCTCCGCCATTCAAACAAGCCGAAGTCGACATTATGTATGGTAAGGGAATTTC
GAAAGAAGGAGAAATTCTTGATATCGGTTCTGAGTTGGATGTTGTGCTTAAGAGTGGTGCATGGTATTCCTACAAGGGAG
AAAGACTAGGTCAGGGCCGTGAAAACTCGAAGCAATTCCTATTAGAAAACGAACCAATCATGAATGAAATTCATGGTGAA
ATTCGTAAGCACTATAACCTGGATGATGACGGTACAGAAGCAGAAGGAAAAGCAAGTGACAGCAAGGAAACAACTGAGCA
GGAAACTTTGGATATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.735

94.318

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

74.006

92.898

0.687
  recA Streptococcus mitis NCTC 12261

66.48

100

0.676
  recA Streptococcus mitis SK321

65.922

100

0.67
  recA Streptococcus pneumoniae R6

66.382

99.716

0.662
  recA Streptococcus pneumoniae Rx1

66.382

99.716

0.662
  recA Streptococcus pneumoniae D39

66.382

99.716

0.662
  recA Streptococcus pneumoniae TIGR4

66.382

99.716

0.662
  recA Streptococcus mutans UA159

65.903

99.148

0.653
  recA Streptococcus pyogenes NZ131

65.517

98.864

0.648
  recA Lactococcus lactis subsp. cremoris KW2

65.165

94.602

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.529

96.591

0.614
  recA Pseudomonas stutzeri DSM 10701

62.722

96.023

0.602
  recA Glaesserella parasuis strain SC1401

60.87

98.011

0.597
  recA Neisseria gonorrhoeae strain FA1090

65.109

91.193

0.594
  recA Neisseria gonorrhoeae MS11

65.109

91.193

0.594
  recA Neisseria gonorrhoeae MS11

65.109

91.193

0.594
  recA Ralstonia pseudosolanacearum GMI1000

66.773

88.92

0.594
  recA Acinetobacter baylyi ADP1

59.259

99.716

0.591
  recA Acinetobacter baumannii D1279779

60.704

96.875

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

91.193

0.582
  recA Vibrio cholerae strain A1552

63.863

91.193

0.582
  recA Helicobacter pylori 26695

63.354

91.477

0.58
  recA Helicobacter pylori strain NCTC11637

63.354

91.477

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

90.909

0.557

Multiple sequence alignment