Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYE72_RS18295 Genome accession   NZ_CP150186
Coordinates   4112617..4113681 (-) Length   354 a.a.
NCBI ID   WP_036688391.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4107617..4118681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE72_RS18275 (NYE72_18275) - 4108454..4108714 (-) 261 WP_019910496.1 stage V sporulation protein S -
  NYE72_RS18280 (NYE72_18280) - 4108914..4109708 (-) 795 WP_076100408.1 TIGR00282 family metallophosphoesterase -
  NYE72_RS18285 (NYE72_18285) rny 4109920..4111461 (-) 1542 WP_036689085.1 ribonuclease Y -
  NYE72_RS18290 (NYE72_18290) - 4111781..4112506 (-) 726 WP_051491576.1 RecX family transcriptional regulator -
  NYE72_RS18295 (NYE72_18295) recA 4112617..4113681 (-) 1065 WP_036688391.1 recombinase RecA Machinery gene
  NYE72_RS18300 (NYE72_18300) - 4113982..4115268 (-) 1287 WP_036688393.1 competence/damage-inducible protein A -
  NYE72_RS18305 (NYE72_18305) pgsA 4115377..4115964 (-) 588 WP_036688397.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYE72_RS18310 (NYE72_18310) - 4116120..4116611 (-) 492 WP_036688400.1 YajQ family cyclic di-GMP-binding protein -
  NYE72_RS18315 (NYE72_18315) - 4116822..4116983 (-) 162 WP_169744781.1 hypothetical protein -
  NYE72_RS18320 (NYE72_18320) - 4117063..4117995 (-) 933 WP_036688403.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38325.77 Da        Isoelectric Point: 4.9127

>NTDB_id=965442 NYE72_RS18295 WP_036688391.1 4112617..4113681(-) (recA) [Paenibacillus sp. FSL L8-0333]
MSDRRAALDMALRQIEKQFGKGSVMKLGESTHMQVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPKYARNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRT
KIKIVKNKVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENAKQFLKEHQDIALIIENK
IREASNLSTIVAAPNNDEIVAEQEEEEKLLLEIE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=965442 NYE72_RS18295 WP_036688391.1 4112617..4113681(-) (recA) [Paenibacillus sp. FSL L8-0333]
TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGGTAATGAAACT
GGGAGAATCCACGCATATGCAAGTGGAAGTTGTACCTAGCGGATCTTTGGCACTTGATATTGCATTAGGTATAGGCGGAC
TTCCAAAGGGACGTATTATTGAAGTATACGGACCGGAATCTTCAGGTAAAACAACAGTTGCTCTTCATGCTATTGCAGAA
GTGCAAAGACAAGGCGGACAAGCTGCTTTTATCGATGCCGAGCATGCGCTTGATCCGAAATATGCACGTAACTTGGGCGT
AAATATCGATGAATTGCTGCTTTCTCAGCCAGATACGGGTGAACAAGCGCTGGAAATCGCCGAAGCACTTGTTCGTAGTG
GAGCCGTTGACATTATTGTCGTTGACTCCGTTGCTGCTTTGGTACCTAAGGCTGAAATTGAAGGCGATATGGGTGATTCC
CACGTCGGACTGCAAGCTCGCTTGATGTCTCAAGCACTTCGTAAGCTTTCTGGTGCCATTAGCAAATCGAATACGATTGC
TATCTTTATCAACCAGCTTCGTGAGAAGATCGGTGTTATGTTCGGTAACCCTGAGACAACTCCGGGTGGTCGTGCATTGA
AATTCTACTCCTCTGTACGTTTAGATGTACGTCGCGTAGAGAGCATCAAGATGGGGAACGATGTGGTTGGTAACCGTACT
AAGATCAAGATTGTGAAGAATAAAGTAGCCCCTCCATTTAAACAGGCTGATGTTGATATCATGTATGGTGAAGGGATTTC
CAAAGAGGGAAGTCTTGTAGATATCGGTACTGAAATGGATATCGTGAATAAGAGTGGTGCATGGTATTCCTACGAAGGCG
AGCGTCTCGGCCAAGGTCGTGAGAATGCTAAGCAGTTTTTGAAGGAACATCAGGATATTGCCCTTATTATTGAGAATAAG
ATCCGTGAAGCAAGTAATTTATCCACTATTGTTGCTGCGCCGAATAATGATGAGATTGTTGCAGAGCAAGAGGAAGAAGA
AAAATTGCTCCTCGAAATCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.373

0.777
  recA Latilactobacillus sakei subsp. sakei 23K

70.262

96.893

0.681
  recA Streptococcus pneumoniae D39

66.952

99.153

0.664
  recA Streptococcus pneumoniae Rx1

66.952

99.153

0.664
  recA Streptococcus pneumoniae R6

66.952

99.153

0.664
  recA Streptococcus pneumoniae TIGR4

66.952

99.153

0.664
  recA Streptococcus mutans UA159

64.365

100

0.658
  recA Streptococcus pyogenes NZ131

70.062

91.525

0.641
  recA Streptococcus mitis NCTC 12261

69.231

91.808

0.636
  recA Lactococcus lactis subsp. cremoris KW2

67.879

93.22

0.633
  recA Streptococcus mitis SK321

68.923

91.808

0.633
  recA Acinetobacter baumannii D1279779

63.429

98.87

0.627
  recA Glaesserella parasuis strain SC1401

62.393

99.153

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.824

96.045

0.613
  recA Vibrio cholerae strain A1552

63.824

96.045

0.613
  recA Acinetobacter baylyi ADP1

61.473

99.718

0.613
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.35

0.607
  recA Ralstonia pseudosolanacearum GMI1000

65.231

91.808

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.908

95.198

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

92.373

0.59
  recA Pseudomonas stutzeri DSM 10701

63.75

90.395

0.576
  recA Helicobacter pylori 26695

62.848

91.243

0.573
  recA Helicobacter pylori strain NCTC11637

62.539

91.243

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.243

0.565

Multiple sequence alignment