Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NST58_RS19520 Genome accession   NZ_CP150178
Coordinates   4322603..4323667 (-) Length   354 a.a.
NCBI ID   WP_076127879.1    Uniprot ID   A0A1R0Z659
Organism   Paenibacillus sp. FSL R10-2796     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4317603..4328667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST58_RS19500 (NST58_19500) - 4318440..4318700 (-) 261 WP_019910496.1 stage V sporulation protein S -
  NST58_RS19505 (NST58_19505) - 4318900..4319694 (-) 795 WP_076276224.1 TIGR00282 family metallophosphoesterase -
  NST58_RS19510 (NST58_19510) rny 4319906..4321447 (-) 1542 WP_036689085.1 ribonuclease Y -
  NST58_RS19515 (NST58_19515) - 4321767..4322492 (-) 726 WP_248548830.1 RecX family transcriptional regulator -
  NST58_RS19520 (NST58_19520) recA 4322603..4323667 (-) 1065 WP_076127879.1 recombinase RecA Machinery gene
  NST58_RS19525 (NST58_19525) - 4323968..4325254 (-) 1287 WP_036688393.1 competence/damage-inducible protein A -
  NST58_RS19530 (NST58_19530) pgsA 4325363..4325950 (-) 588 WP_036688397.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST58_RS19535 (NST58_19535) - 4326106..4326597 (-) 492 WP_076127877.1 YajQ family cyclic di-GMP-binding protein -
  NST58_RS19540 (NST58_19540) - 4326808..4326969 (-) 162 WP_169744781.1 hypothetical protein -
  NST58_RS19545 (NST58_19545) - 4327049..4327981 (-) 933 WP_076179903.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38353.87 Da        Isoelectric Point: 4.9972

>NTDB_id=965144 NST58_RS19520 WP_076127879.1 4322603..4323667(-) (recA) [Paenibacillus sp. FSL R10-2796]
MSDRRAALDMALRQIEKQFGKGSVMKLGESTHMQVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPKYARNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRT
KIKIVKNKVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENAKQFLKEHQDIALIIENK
IREASNLSTIVAAPKNEDIIAEQEEEEKLLLEIE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=965144 NST58_RS19520 WP_076127879.1 4322603..4323667(-) (recA) [Paenibacillus sp. FSL R10-2796]
TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGGTAATGAAACT
GGGAGAATCCACGCATATGCAAGTGGAAGTTGTACCTAGCGGATCTTTGGCACTTGATATTGCGTTAGGTATAGGCGGAC
TTCCAAAGGGACGTATTATTGAAGTATATGGACCGGAATCTTCAGGTAAAACAACAGTTGCTCTTCATGCTATTGCAGAA
GTGCAAAGACAAGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCGCTTGATCCGAAATATGCACGTAACTTGGGCGT
AAATATCGATGAGTTGCTGCTTTCTCAGCCAGACACGGGTGAACAAGCGCTGGAAATCGCCGAAGCACTCGTTCGTAGTG
GAGCCGTTGATATTATTGTCGTTGACTCCGTTGCTGCTTTGGTACCTAAGGCTGAAATTGAAGGCGATATGGGTGATTCC
CACGTCGGATTGCAGGCTCGCTTGATGTCTCAAGCACTTCGTAAGCTTTCTGGTGCCATTAGCAAATCCAATACGATCGC
TATCTTTATCAACCAGCTTCGTGAGAAGATCGGTGTTATGTTCGGTAACCCTGAGACAACTCCGGGTGGTCGTGCATTGA
AATTCTACTCTTCTGTACGTTTAGATGTACGTCGCGTAGAGAGCATCAAGATGGGGAACGATGTGGTTGGTAACCGTACT
AAGATCAAGATTGTGAAGAATAAAGTAGCCCCTCCTTTTAAACAGGCTGATGTTGATATTATGTACGGTGAAGGGATTTC
CAAAGAGGGGAGTCTTGTAGATATCGGTACTGAAATGGATATCGTGAATAAGAGTGGTGCATGGTATTCCTACGAAGGCG
AGCGTCTCGGTCAAGGACGTGAGAATGCTAAACAGTTTTTGAAGGAACATCAGGATATTGCCCTTATTATTGAGAATAAG
ATCCGTGAAGCAAGTAATTTATCCACTATTGTTGCTGCGCCGAAGAATGAAGATATTATTGCAGAGCAAGAAGAAGAAGA
GAAATTGCTTCTCGAAATCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0Z659

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.373

0.777
  recA Latilactobacillus sakei subsp. sakei 23K

69.253

98.305

0.681
  recA Streptococcus pneumoniae R6

69.091

93.22

0.644
  recA Streptococcus pneumoniae TIGR4

69.091

93.22

0.644
  recA Streptococcus pneumoniae Rx1

69.091

93.22

0.644
  recA Streptococcus pneumoniae D39

69.091

93.22

0.644
  recA Streptococcus pyogenes NZ131

70.062

91.525

0.641
  recA Streptococcus mitis NCTC 12261

69.231

91.808

0.636
  recA Streptococcus mutans UA159

69.444

91.525

0.636
  recA Lactococcus lactis subsp. cremoris KW2

67.879

93.22

0.633
  recA Streptococcus mitis SK321

68.923

91.808

0.633
  recA Acinetobacter baumannii D1279779

63.429

98.87

0.627
  recA Vibrio cholerae strain A1552

64.118

96.045

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.118

96.045

0.616
  recA Acinetobacter baylyi ADP1

61.473

99.718

0.613
  recA Glaesserella parasuis strain SC1401

61.823

99.153

0.613
  recA Ralstonia pseudosolanacearum GMI1000

64.565

94.068

0.607
  recA Neisseria gonorrhoeae MS11

63.772

94.35

0.602
  recA Neisseria gonorrhoeae MS11

63.772

94.35

0.602
  recA Neisseria gonorrhoeae strain FA1090

63.772

94.35

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.315

95.198

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

92.373

0.59
  recA Pseudomonas stutzeri DSM 10701

63.75

90.395

0.576
  recA Helicobacter pylori 26695

62.848

91.243

0.573
  recA Helicobacter pylori strain NCTC11637

62.539

91.243

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.243

0.565

Multiple sequence alignment