Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DAETH_RS02980 Genome accession   NZ_AP026560
Coordinates   560224..561300 (-) Length   358 a.a.
NCBI ID   WP_264776450.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555224..566300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS02945 (DAETH_05800) - 555691..556095 (-) 405 WP_264776443.1 Fur family transcriptional regulator -
  DAETH_RS02950 (DAETH_05810) - 556303..557238 (+) 936 WP_264776444.1 biotin--[acetyl-CoA-carboxylase] ligase -
  DAETH_RS02955 (DAETH_05820) - 557235..557819 (+) 585 WP_264776445.1 biotin transporter BioY -
  DAETH_RS02960 (DAETH_05830) - 557960..558781 (+) 822 WP_264776446.1 DUF2971 domain-containing protein -
  DAETH_RS02965 (DAETH_05840) - 558959..559174 (-) 216 WP_264776447.1 hypothetical protein -
  DAETH_RS24610 - 559269..559403 (-) 135 Protein_578 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  DAETH_RS02970 (DAETH_05860) - 559435..559839 (-) 405 WP_264776448.1 PIN domain-containing protein -
  DAETH_RS02975 (DAETH_05870) - 559839..560090 (-) 252 WP_264776449.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  DAETH_RS02980 (DAETH_05880) recA 560224..561300 (-) 1077 WP_264776450.1 recombinase RecA Machinery gene
  DAETH_RS02985 (DAETH_05890) thpR 561297..562136 (-) 840 WP_264776451.1 RNA 2',3'-cyclic phosphodiesterase -
  DAETH_RS02990 (DAETH_05900) - 562133..563353 (-) 1221 WP_264776452.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DAETH_RS02995 (DAETH_05910) - 563475..564518 (-) 1044 WP_264776453.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37953.53 Da        Isoelectric Point: 5.5950

>NTDB_id=96401 DAETH_RS02980 WP_264776450.1 560224..561300(-) (recA) [Deinococcus aetherius strain ST0316]
MSKDITKELGTPGDSKERTKAIETAMSQIEKQFGKGSIMRLGAESKLDVQTISTGSLSLDLALGVGGIPRGRITEIYGPE
SGGKTTLALSIVAQAQRAGGTAAFIDAEHALDPVYARSLGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA
LTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKI
GQPIKVGNDAVANTVKVKTVKNKVAAPFKEVELALVYGKGFDQLSDLVTLAADMDIIKKAGSFYSYGDERIGQGKEKAIA
HIAERPEMEQEIRERVLASIKSGGAELPTVATVPAVAE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=96401 DAETH_RS02980 WP_264776450.1 560224..561300(-) (recA) [Deinococcus aetherius strain ST0316]
ATGAGCAAGGACATCACCAAGGAACTCGGCACGCCCGGCGACAGCAAGGAGCGCACCAAGGCCATCGAAACGGCCATGAG
CCAGATCGAGAAGCAGTTCGGCAAGGGCTCGATCATGCGGCTGGGCGCCGAGAGCAAGCTCGACGTGCAGACCATCAGCA
CGGGCAGCCTGAGCCTCGACCTGGCGCTGGGTGTGGGCGGTATTCCGCGCGGGCGCATCACCGAGATCTACGGCCCCGAG
TCCGGCGGCAAGACCACCCTGGCCCTGAGCATCGTCGCGCAGGCCCAGCGGGCAGGGGGCACGGCGGCCTTTATCGACGC
CGAGCACGCCCTCGACCCCGTGTACGCGCGGAGCCTTGGCGTGAACACCGACGAGCTGCTCGTGTCGCAGCCCGACAACG
GCGAGCAGGCGCTGGAGATCATGGAACTCCTCGTGCGTTCGGGCGCTATCGACGTGGTGGTCGTGGACTCGGTGGCCGCG
CTGACCCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCT
TCGCAAGCTGACCGCCATTCTGAGCAAGACGGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCGTGA
TGTACGGCAACCCCGAGACCACCACGGGCGGCCGGGCGCTGAAGTTCTACTCGTCGGTGCGGCTCGACGTGCGCAAGATC
GGCCAGCCCATCAAGGTCGGCAACGACGCCGTGGCGAACACCGTCAAGGTCAAGACCGTGAAGAACAAGGTCGCCGCTCC
CTTCAAGGAGGTCGAGCTGGCGCTGGTGTACGGCAAGGGCTTCGACCAGCTCAGCGACCTCGTGACCCTCGCCGCCGACA
TGGACATCATCAAGAAGGCCGGGAGCTTTTACTCCTACGGCGACGAGCGCATCGGCCAGGGCAAGGAAAAGGCCATCGCC
CACATCGCCGAGCGCCCCGAGATGGAGCAGGAGATCCGCGAGCGCGTGCTGGCGAGCATCAAGAGCGGCGGCGCCGAACT
GCCCACGGTGGCGACGGTGCCCGCCGTGGCGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

92.128

95.81

0.883
  recA Streptococcus pneumoniae Rx1

61.721

94.134

0.581
  recA Streptococcus pneumoniae TIGR4

61.721

94.134

0.581
  recA Streptococcus pneumoniae R6

61.721

94.134

0.581
  recA Streptococcus pneumoniae D39

61.721

94.134

0.581
  recA Glaesserella parasuis strain SC1401

62.538

92.458

0.578
  recA Streptococcus mitis SK321

61.607

93.855

0.578
  recA Streptococcus mitis NCTC 12261

61.607

93.855

0.578
  recA Acinetobacter baumannii D1279779

61.31

93.855

0.575
  recA Streptococcus mutans UA159

60.059

94.413

0.567
  recA Acinetobacter baylyi ADP1

62.654

90.503

0.567
  recA Vibrio cholerae strain A1552

61.963

91.061

0.564
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.963

91.061

0.564
  recA Streptococcus pyogenes NZ131

59.467

94.413

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.92

90.223

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.562

89.385

0.55
  recA Neisseria gonorrhoeae strain FA1090

59.692

90.782

0.542
  recA Neisseria gonorrhoeae MS11

59.692

90.782

0.542
  recA Neisseria gonorrhoeae MS11

59.692

90.782

0.542
  recA Lactococcus lactis subsp. cremoris KW2

56.932

94.693

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.588

94.972

0.528
  recA Ralstonia pseudosolanacearum GMI1000

61.039

86.034

0.525
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.716

90.503

0.522
  recA Pseudomonas stutzeri DSM 10701

57.538

90.782

0.522
  recA Helicobacter pylori strain NCTC11637

55.689

93.296

0.52
  recA Helicobacter pylori 26695

55.689

93.296

0.52

Multiple sequence alignment