Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WKI13_RS08600 Genome accession   NZ_CP149817
Coordinates   2100698..2101726 (+) Length   342 a.a.
NCBI ID   WP_018277825.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain T7902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2095698..2106726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI13_RS08580 (WKI13_08580) - 2098000..2098725 (+) 726 WP_018277821.1 hypothetical protein -
  WKI13_RS08585 (WKI13_08585) - 2099019..2099250 (+) 232 Protein_1701 IS3 family transposase -
  WKI13_RS08590 (WKI13_08590) - 2099355..2099822 (-) 468 WP_230537233.1 DUF4124 domain-containing protein -
  WKI13_RS08595 (WKI13_08595) - 2099930..2100448 (+) 519 WP_018277824.1 CinA family protein -
  WKI13_RS08600 (WKI13_08600) recA 2100698..2101726 (+) 1029 WP_018277825.1 recombinase RecA Machinery gene
  WKI13_RS08605 (WKI13_08605) - 2102205..2102720 (+) 516 WP_018277826.1 regulatory protein RecX -
  WKI13_RS08610 (WKI13_08610) trpA 2103030..2103794 (-) 765 WP_018277827.1 tryptophan synthase subunit alpha -
  WKI13_RS08615 (WKI13_08615) trpB 2103778..2105070 (-) 1293 WP_018277828.1 tryptophan synthase subunit beta -
  WKI13_RS08620 (WKI13_08620) - 2105246..2105716 (+) 471 WP_026193662.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36710.91 Da        Isoelectric Point: 5.0316

>NTDB_id=961664 WKI13_RS08600 WP_018277825.1 2100698..2101726(+) (recA) [Teredinibacter turnerae strain T7902]
MDANKEKALQAALQQIDRQFGKGTVMRMGDKELEAIPAVSTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAAKLGVNVDDLIVSQPDTGEQALEVADMLVRSGAIDVLVVDSVAALTPKAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVIGSE
TRVKVVKNKVAPPFKQTEFQILYGTGINRLGEVIDYGVKLGLIDKAGAWYSYNGDKIGQGKNNAIQYLREHPEAAQTLED
RLKAELLGQSFEEAVTAEAESE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=961664 WKI13_RS08600 WP_018277825.1 2100698..2101726(+) (recA) [Teredinibacter turnerae strain T7902]
ATGGATGCTAACAAAGAAAAAGCGTTGCAGGCGGCACTGCAACAAATTGACCGCCAGTTTGGTAAAGGCACCGTCATGCG
TATGGGTGACAAAGAGCTGGAAGCCATTCCCGCCGTGTCAACCGGTTCGCTAGGGCTGGATGTCGCCCTGGGCATTGGCG
GTTTGCCGAAAGGTCGTATTGTTGAAATTTACGGCCCGGAATCTTCTGGTAAAACGACACTGACGTTACAGGTGATTGCT
GAGGCACAGCGCAAAGGTGGAACCTGTGCCTTCGTCGACGCCGAGCACGCACTTGACCCCATTTACGCAGCCAAGCTGGG
CGTTAACGTGGACGATCTTATTGTGTCGCAGCCAGATACCGGCGAACAGGCGTTGGAAGTCGCGGACATGCTGGTTCGTT
CAGGTGCAATTGATGTGTTGGTTGTCGACTCGGTGGCCGCACTCACGCCGAAAGCAGAAATTGAAGGCGAAATGGGGGAT
CACCACGTTGGCTTGCAGGCGCGATTGATGTCGCAAGCGCTGCGAAAAATCACTGGTAATATTAAAAACGCGAATTGTCT
GGCGATTTTTATTAACCAGATTCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACTACGACTGGCGGTAACGCGC
TGAAGTTTTACTCTTCTGTGCGTCTCGATATTCGTCGCATTGGTTCGGTGAAAGATGGCGATGAGGTTATTGGCTCCGAA
ACGCGAGTTAAGGTCGTTAAAAACAAAGTTGCTCCTCCGTTTAAGCAGACTGAATTCCAGATTCTATACGGCACAGGTAT
TAACCGCTTGGGTGAAGTAATCGATTACGGCGTTAAGCTGGGGCTTATCGACAAAGCGGGCGCCTGGTATAGCTACAACG
GCGATAAAATCGGGCAGGGTAAGAATAACGCTATTCAGTATTTGCGTGAGCACCCGGAAGCTGCCCAAACACTTGAAGAC
CGGCTTAAAGCAGAGCTTTTAGGTCAATCCTTTGAAGAGGCTGTAACAGCGGAAGCAGAAAGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.941

99.415

0.775
  recA Acinetobacter baylyi ADP1

72.886

100

0.731
  recA Acinetobacter baumannii D1279779

72.807

100

0.728
  recA Ralstonia pseudosolanacearum GMI1000

70.468

100

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

95.614

0.69
  recA Vibrio cholerae strain A1552

72.171

95.614

0.69
  recA Glaesserella parasuis strain SC1401

71.429

94.152

0.673
  recA Neisseria gonorrhoeae MS11

69.538

95.029

0.661
  recA Neisseria gonorrhoeae MS11

69.538

95.029

0.661
  recA Neisseria gonorrhoeae strain FA1090

69.538

95.029

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.458

93.275

0.62
  recA Helicobacter pylori 26695

63.303

95.614

0.605
  recA Helicobacter pylori strain NCTC11637

63.889

94.737

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

96.199

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

61.25

93.567

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

93.86

0.573
  recA Streptococcus mutans UA159

59.077

95.029

0.561
  recA Streptococcus pneumoniae Rx1

58.232

95.906

0.558
  recA Streptococcus pneumoniae D39

58.232

95.906

0.558
  recA Streptococcus pneumoniae R6

58.232

95.906

0.558
  recA Streptococcus pneumoniae TIGR4

58.232

95.906

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

94.444

0.556
  recA Streptococcus pyogenes NZ131

58.282

95.322

0.556
  recA Streptococcus mitis NCTC 12261

57.317

95.906

0.55
  recA Streptococcus mitis SK321

57.317

95.906

0.55
  recA Lactococcus lactis subsp. cremoris KW2

56.402

95.906

0.541