Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS53_RS06785 | Genome accession | NZ_CP149767 |
| Coordinates | 1445052..1446098 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0068 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1416680..1493892 | 1445052..1446098 | within | 0 |
Gene organization within MGE regions
Location: 1416680..1493892
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS53_RS06670 (WIS53_06670) | acd | 1416755..1418578 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIS53_RS06675 (WIS53_06675) | - | 1418793..1423091 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS53_RS06680 (WIS53_06680) | rimP | 1423295..1423756 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS53_RS06685 (WIS53_06685) | nusA | 1423786..1424940 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS53_RS06690 (WIS53_06690) | - | 1424947..1425228 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS53_RS06695 (WIS53_06695) | - | 1425218..1425529 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS53_RS06700 (WIS53_06700) | infB | 1425551..1427491 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS53_RS06705 (WIS53_06705) | rbfA | 1427534..1427914 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS53_RS06710 (WIS53_06710) | - | 1427895..1428878 (+) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIS53_RS06715 (WIS53_06715) | truB | 1428891..1429796 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS53_RS06720 (WIS53_06720) | - | 1429927..1430856 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS53_RS06725 (WIS53_06725) | rpsO | 1430960..1431217 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS53_RS06730 (WIS53_06730) | - | 1431457..1432302 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS53_RS06735 (WIS53_06735) | pnp | 1432427..1434538 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS53_RS06740 (WIS53_06740) | - | 1434804..1435547 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS53_RS06745 (WIS53_06745) | - | 1435705..1436952 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS53_RS06750 (WIS53_06750) | - | 1436987..1437232 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS53_RS06755 (WIS53_06755) | dapG | 1437242..1438465 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS53_RS06760 (WIS53_06760) | - | 1438578..1439312 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS53_RS06765 (WIS53_06765) | - | 1439435..1441846 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS53_RS06770 (WIS53_06770) | mnmH | 1441849..1442907 (+) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS53_RS06775 (WIS53_06775) | rimO | 1442901..1444235 (+) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS53_RS06780 (WIS53_06780) | pgsA | 1444222..1444764 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS53_RS06785 (WIS53_06785) | recA | 1445052..1446098 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS53_RS06790 (WIS53_06790) | rny | 1446274..1447815 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS53_RS06795 (WIS53_06795) | - | 1448129..1450465 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS53_RS06800 (WIS53_06800) | - | 1450847..1452628 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS53_RS06805 (WIS53_06805) | lepB | 1452710..1453240 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS53_RS06810 (WIS53_06810) | - | 1453280..1454104 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS53_RS06815 (WIS53_06815) | - | 1454361..1455269 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS53_RS06820 (WIS53_06820) | purB | 1455413..1456858 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS53_RS06825 (WIS53_06825) | - | 1457169..1457621 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS53_RS06830 (WIS53_06830) | - | 1457956..1459152 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS53_RS06835 (WIS53_06835) | galT | 1459537..1460487 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS53_RS06840 (WIS53_06840) | - | 1460648..1461400 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS53_RS06845 (WIS53_06845) | - | 1461492..1462268 (-) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIS53_RS06850 (WIS53_06850) | - | 1462583..1464481 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS53_RS06855 (WIS53_06855) | - | 1464609..1465730 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS53_RS06860 (WIS53_06860) | - | 1465929..1466261 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS53_RS06865 (WIS53_06865) | - | 1466248..1467306 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS53_RS06870 (WIS53_06870) | - | 1467299..1468369 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS53_RS06875 (WIS53_06875) | - | 1468471..1469007 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS53_RS06880 (WIS53_06880) | - | 1469123..1469830 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS53_RS06885 (WIS53_06885) | - | 1469832..1470548 (+) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS53_RS06890 (WIS53_06890) | - | 1470550..1471308 (+) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS53_RS06895 (WIS53_06895) | - | 1471443..1472831 (+) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIS53_RS06900 (WIS53_06900) | - | 1472907..1473728 (-) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIS53_RS06905 (WIS53_06905) | - | 1473979..1475133 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS53_RS06910 (WIS53_06910) | - | 1475316..1475516 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS53_RS06915 (WIS53_06915) | - | 1475937..1476365 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS53_RS06920 (WIS53_06920) | - | 1476508..1477263 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS53_RS06925 (WIS53_06925) | - | 1477964..1478470 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS53_RS06930 (WIS53_06930) | - | 1478552..1478872 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS53_RS06935 (WIS53_06935) | - | 1479041..1479238 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS53_RS06940 (WIS53_06940) | - | 1479343..1479783 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS53_RS06945 (WIS53_06945) | - | 1480032..1480475 (+) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIS53_RS06950 (WIS53_06950) | - | 1480480..1481544 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS53_RS06955 (WIS53_06955) | - | 1481558..1481986 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS53_RS06960 (WIS53_06960) | - | 1482100..1482546 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS53_RS06965 (WIS53_06965) | - | 1482573..1482740 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS53_RS06970 (WIS53_06970) | - | 1482740..1485193 (+) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIS53_RS06975 (WIS53_06975) | - | 1485193..1485615 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS53_RS06980 (WIS53_06980) | - | 1485897..1487426 (+) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIS53_RS06985 (WIS53_06985) | - | 1487442..1487768 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS53_RS06990 (WIS53_06990) | - | 1487768..1488196 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS53_RS06995 (WIS53_06995) | - | 1488189..1489241 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS53_RS07000 (WIS53_07000) | - | 1489238..1489936 (+) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIS53_RS07005 (WIS53_07005) | - | 1489937..1490920 (+) | 984 | WP_003438452.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961343 WIS53_RS06785 WP_003428218.1 1445052..1446098(+) (recA) [Clostridioides difficile strain Z1322PCD0068]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961343 WIS53_RS06785 WP_003428218.1 1445052..1446098(+) (recA) [Clostridioides difficile strain Z1322PCD0068]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.