Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS11_RS06635 | Genome accession | NZ_CP149765 |
| Coordinates | 1415823..1416869 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0004 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1389766..1450488 | 1415823..1416869 | within | 0 |
Gene organization within MGE regions
Location: 1389766..1450488
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS11_RS06520 (WIS11_06520) | rimP | 1392182..1392643 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS11_RS06525 (WIS11_06525) | nusA | 1392673..1393827 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS11_RS06530 (WIS11_06530) | - | 1393834..1394115 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS11_RS06535 (WIS11_06535) | - | 1394105..1394416 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS11_RS06540 (WIS11_06540) | infB | 1394438..1396378 (+) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIS11_RS06545 (WIS11_06545) | rbfA | 1396421..1396801 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS11_RS06550 (WIS11_06550) | - | 1396782..1397459 (+) | 678 | Protein_1197 | DHH family phosphoesterase | - |
| WIS11_RS06555 (WIS11_06555) | tnpB | 1398108..1399226 (+) | 1119 | WP_077715958.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS11_RS06560 (WIS11_06560) | - | 1399344..1399649 (+) | 306 | Protein_1199 | DHHA1 domain-containing protein | - |
| WIS11_RS06565 (WIS11_06565) | truB | 1399662..1400567 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS11_RS06570 (WIS11_06570) | - | 1400698..1401627 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS11_RS06575 (WIS11_06575) | rpsO | 1401731..1401988 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS11_RS06580 (WIS11_06580) | - | 1402228..1403073 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS11_RS06585 (WIS11_06585) | pnp | 1403198..1405309 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS11_RS06590 (WIS11_06590) | - | 1405575..1406318 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS11_RS06595 (WIS11_06595) | - | 1406476..1407723 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS11_RS06600 (WIS11_06600) | - | 1407758..1408003 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS11_RS06605 (WIS11_06605) | dapG | 1408013..1409236 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS11_RS06610 (WIS11_06610) | - | 1409349..1410083 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS11_RS06615 (WIS11_06615) | - | 1410206..1412617 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS11_RS06620 (WIS11_06620) | mnmH | 1412620..1413678 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS11_RS06625 (WIS11_06625) | rimO | 1413672..1415006 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS11_RS06630 (WIS11_06630) | pgsA | 1414993..1415535 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS11_RS06635 (WIS11_06635) | recA | 1415823..1416869 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS11_RS06640 (WIS11_06640) | rny | 1417045..1418586 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS11_RS06645 (WIS11_06645) | - | 1419221..1421002 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS11_RS06650 (WIS11_06650) | lepB | 1421084..1421614 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIS11_RS06655 (WIS11_06655) | - | 1421654..1422478 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS11_RS06660 (WIS11_06660) | - | 1422735..1423643 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS11_RS06665 (WIS11_06665) | purB | 1423787..1425232 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIS11_RS06670 (WIS11_06670) | - | 1425544..1425996 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS11_RS06675 (WIS11_06675) | - | 1426331..1427527 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS11_RS06680 (WIS11_06680) | galT | 1427912..1428862 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS11_RS06685 (WIS11_06685) | - | 1429023..1429775 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS11_RS06690 (WIS11_06690) | - | 1429867..1430643 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS11_RS06695 (WIS11_06695) | - | 1430958..1432856 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS11_RS06700 (WIS11_06700) | - | 1432984..1434105 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS11_RS06705 (WIS11_06705) | - | 1434304..1434636 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS11_RS06710 (WIS11_06710) | - | 1434623..1435681 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS11_RS06715 (WIS11_06715) | - | 1435674..1436744 (+) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS11_RS06720 (WIS11_06720) | - | 1436846..1437382 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS11_RS06725 (WIS11_06725) | - | 1437498..1438205 (+) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS11_RS06730 (WIS11_06730) | - | 1438207..1438923 (+) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS11_RS06735 (WIS11_06735) | - | 1438925..1439683 (+) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS11_RS06740 (WIS11_06740) | - | 1439818..1441206 (+) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIS11_RS06745 (WIS11_06745) | - | 1441282..1442103 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS11_RS06750 (WIS11_06750) | - | 1442354..1443508 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS11_RS06755 (WIS11_06755) | - | 1443691..1443891 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS11_RS06760 (WIS11_06760) | - | 1444312..1444740 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS11_RS06765 (WIS11_06765) | - | 1444883..1445638 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS11_RS06770 (WIS11_06770) | - | 1446339..1446845 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS11_RS06775 (WIS11_06775) | - | 1446927..1447247 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS11_RS06780 (WIS11_06780) | - | 1447416..1447613 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS11_RS06785 (WIS11_06785) | - | 1447717..1448157 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS11_RS06790 (WIS11_06790) | - | 1448406..1448849 (+) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIS11_RS06795 (WIS11_06795) | - | 1448854..1449918 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS11_RS06800 (WIS11_06800) | - | 1449932..1450360 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961309 WIS11_RS06635 WP_003428218.1 1415823..1416869(+) (recA) [Clostridioides difficile strain Z1322HCD0004]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961309 WIS11_RS06635 WP_003428218.1 1415823..1416869(+) (recA) [Clostridioides difficile strain Z1322HCD0004]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.