Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS03_RS07295 | Genome accession | NZ_CP149758 |
| Coordinates | 1591260..1592306 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0027 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1543452..1624438 | 1591260..1592306 | within | 0 |
Gene organization within MGE regions
Location: 1543452..1624438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS03_RS07075 (WIS03_07075) | - | 1546427..1547410 (-) | 984 | WP_021366456.1 | phage tail protein | - |
| WIS03_RS07080 (WIS03_07080) | - | 1547411..1548109 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIS03_RS07085 (WIS03_07085) | - | 1548106..1549158 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS03_RS07090 (WIS03_07090) | - | 1549151..1549579 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS03_RS07095 (WIS03_07095) | - | 1549579..1549905 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS03_RS07100 (WIS03_07100) | - | 1549921..1551450 (-) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| WIS03_RS07105 (WIS03_07105) | - | 1551732..1552154 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS03_RS07110 (WIS03_07110) | - | 1552154..1554607 (-) | 2454 | WP_159376151.1 | hypothetical protein | - |
| WIS03_RS07115 (WIS03_07115) | - | 1554607..1554774 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS03_RS07120 (WIS03_07120) | - | 1554801..1555247 (-) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS03_RS07125 (WIS03_07125) | - | 1555373..1555801 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS03_RS07130 (WIS03_07130) | - | 1555815..1556879 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS03_RS07135 (WIS03_07135) | - | 1556884..1557327 (-) | 444 | WP_159376150.1 | DUF6838 family protein | - |
| WIS03_RS07140 (WIS03_07140) | - | 1557576..1558016 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS03_RS07145 (WIS03_07145) | - | 1558120..1558317 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS03_RS07150 (WIS03_07150) | - | 1558486..1558806 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS03_RS07155 (WIS03_07155) | - | 1558888..1559394 (+) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIS03_RS07160 (WIS03_07160) | - | 1560095..1560850 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS03_RS07165 (WIS03_07165) | - | 1560993..1561421 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS03_RS07170 (WIS03_07170) | - | 1561842..1562042 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS03_RS07175 (WIS03_07175) | - | 1562225..1563379 (-) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| WIS03_RS07180 (WIS03_07180) | - | 1563630..1564451 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS03_RS07185 (WIS03_07185) | - | 1564527..1565915 (-) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| WIS03_RS07190 (WIS03_07190) | - | 1566050..1566808 (-) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS03_RS07195 (WIS03_07195) | - | 1566810..1567526 (-) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS03_RS07200 (WIS03_07200) | - | 1567528..1568235 (-) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS03_RS07205 (WIS03_07205) | - | 1568351..1568887 (-) | 537 | WP_075052540.1 | hypothetical protein | - |
| WIS03_RS07210 (WIS03_07210) | - | 1568989..1570059 (-) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS03_RS07215 (WIS03_07215) | - | 1570052..1571110 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS03_RS07220 (WIS03_07220) | - | 1571097..1571429 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS03_RS07225 (WIS03_07225) | - | 1571628..1572749 (+) | 1122 | WP_003428201.1 | glycosyltransferase | - |
| WIS03_RS07230 (WIS03_07230) | - | 1572877..1574775 (-) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| WIS03_RS07235 (WIS03_07235) | - | 1575090..1575866 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS03_RS07240 (WIS03_07240) | - | 1575958..1576710 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS03_RS07245 (WIS03_07245) | galT | 1576871..1577821 (-) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS03_RS07250 (WIS03_07250) | - | 1578206..1579402 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS03_RS07255 (WIS03_07255) | - | 1579737..1580189 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS03_RS07260 (WIS03_07260) | purB | 1580500..1581945 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS03_RS07265 (WIS03_07265) | - | 1582089..1582997 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS03_RS07270 (WIS03_07270) | - | 1583254..1584078 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS03_RS07275 (WIS03_07275) | lepB | 1584118..1584648 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS03_RS07280 (WIS03_07280) | - | 1584730..1586511 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS03_RS07285 (WIS03_07285) | - | 1586893..1589229 (-) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS03_RS07290 (WIS03_07290) | rny | 1589543..1591084 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS03_RS07295 (WIS03_07295) | recA | 1591260..1592306 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS03_RS07300 (WIS03_07300) | pgsA | 1592594..1593136 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS03_RS07305 (WIS03_07305) | rimO | 1593123..1594457 (-) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS03_RS07310 (WIS03_07310) | mnmH | 1594451..1595509 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS03_RS07315 (WIS03_07315) | - | 1595512..1597923 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS03_RS07320 (WIS03_07320) | - | 1598046..1598675 (-) | 630 | WP_021363436.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS03_RS07325 (WIS03_07325) | tnpB | 1598862..1599980 (-) | 1119 | WP_339072209.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS03_RS07330 (WIS03_07330) | dapG | 1600769..1601992 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS03_RS07335 (WIS03_07335) | - | 1602002..1602247 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS03_RS07340 (WIS03_07340) | - | 1602282..1603529 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS03_RS07345 (WIS03_07345) | - | 1603687..1604430 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS03_RS07350 (WIS03_07350) | pnp | 1604696..1606807 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS03_RS07355 (WIS03_07355) | - | 1606932..1607777 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS03_RS07360 (WIS03_07360) | rpsO | 1608017..1608274 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS03_RS07365 (WIS03_07365) | - | 1608378..1609307 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS03_RS07370 (WIS03_07370) | truB | 1609438..1610343 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS03_RS07375 (WIS03_07375) | - | 1610356..1610661 (-) | 306 | Protein_1470 | DHHA1 domain-containing protein | - |
| WIS03_RS07380 (WIS03_07380) | tnpB | 1610779..1611897 (-) | 1119 | WP_339072203.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS03_RS07385 (WIS03_07385) | - | 1612546..1613223 (-) | 678 | Protein_1472 | DHH family phosphoesterase | - |
| WIS03_RS07390 (WIS03_07390) | rbfA | 1613204..1613584 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS03_RS07395 (WIS03_07395) | infB | 1613627..1615567 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS03_RS07400 (WIS03_07400) | - | 1615589..1615900 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS03_RS07405 (WIS03_07405) | - | 1615890..1616171 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS03_RS07410 (WIS03_07410) | nusA | 1616178..1617332 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS03_RS07415 (WIS03_07415) | rimP | 1617362..1617823 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS03_RS07420 (WIS03_07420) | - | 1618027..1622325 (-) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS03_RS07425 (WIS03_07425) | acd | 1622540..1624363 (-) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961256 WIS03_RS07295 WP_003428218.1 1591260..1592306(-) (recA) [Clostridioides difficile strain Z1322HCD0027]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961256 WIS03_RS07295 WP_003428218.1 1591260..1592306(-) (recA) [Clostridioides difficile strain Z1322HCD0027]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.