Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS39_RS13490 | Genome accession | NZ_CP149753 |
| Coordinates | 2917908..2918954 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0031 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2875232..2946838 | 2917908..2918954 | within | 0 |
Gene organization within MGE regions
Location: 2875232..2946838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS39_RS13290 (WIS39_13290) | - | 2876766..2877188 (-) | 423 | WP_339110672.1 | hypothetical protein | - |
| WIS39_RS13295 (WIS39_13295) | - | 2877188..2879518 (-) | 2331 | WP_339110673.1 | hypothetical protein | - |
| WIS39_RS13300 (WIS39_13300) | - | 2879518..2879685 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS39_RS13305 (WIS39_13305) | - | 2879712..2880158 (-) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS39_RS13310 (WIS39_13310) | - | 2880272..2880700 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS39_RS13315 (WIS39_13315) | - | 2880714..2881778 (-) | 1065 | WP_339110674.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS39_RS13320 (WIS39_13320) | - | 2881783..2882226 (-) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIS39_RS13325 (WIS39_13325) | - | 2882475..2882915 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS39_RS13330 (WIS39_13330) | - | 2883020..2883217 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS39_RS13335 (WIS39_13335) | - | 2883386..2883706 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS39_RS13340 (WIS39_13340) | - | 2883788..2884294 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS39_RS13345 (WIS39_13345) | - | 2884995..2885750 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS39_RS13350 (WIS39_13350) | - | 2885893..2886321 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS39_RS13355 (WIS39_13355) | - | 2886742..2886942 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS39_RS13360 (WIS39_13360) | - | 2887125..2888279 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS39_RS13365 (WIS39_13365) | - | 2888530..2889351 (+) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIS39_RS13370 (WIS39_13370) | - | 2889427..2890815 (-) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIS39_RS13375 (WIS39_13375) | - | 2890950..2891708 (-) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS39_RS13380 (WIS39_13380) | - | 2891710..2892426 (-) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS39_RS13385 (WIS39_13385) | - | 2892428..2893135 (-) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS39_RS13390 (WIS39_13390) | - | 2893251..2893787 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS39_RS13395 (WIS39_13395) | - | 2893889..2894959 (-) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS39_RS13400 (WIS39_13400) | - | 2894952..2896010 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS39_RS13405 (WIS39_13405) | - | 2895997..2896329 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS39_RS13410 (WIS39_13410) | - | 2896528..2897649 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS39_RS13415 (WIS39_13415) | - | 2897777..2899675 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS39_RS13420 (WIS39_13420) | - | 2899990..2900766 (+) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIS39_RS13425 (WIS39_13425) | - | 2900858..2901610 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS39_RS13430 (WIS39_13430) | galT | 2901771..2902721 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS39_RS13435 (WIS39_13435) | - | 2903106..2904302 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS39_RS13440 (WIS39_13440) | - | 2904414..2905760 (-) | 1347 | WP_339110675.1 | 6-phospho-alpha-glucosidase | - |
| WIS39_RS13445 (WIS39_13445) | - | 2905893..2906645 (-) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| WIS39_RS13450 (WIS39_13450) | - | 2906793..2908370 (-) | 1578 | WP_021365327.1 | PTS transporter subunit EIIC | - |
| WIS39_RS13455 (WIS39_13455) | - | 2908782..2909234 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS39_RS13460 (WIS39_13460) | purB | 2909545..2910990 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS39_RS13465 (WIS39_13465) | - | 2911134..2912042 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS39_RS13470 (WIS39_13470) | - | 2912299..2913123 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS39_RS13475 (WIS39_13475) | lepB | 2913163..2913693 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS39_RS13480 (WIS39_13480) | - | 2913775..2915556 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS39_RS13485 (WIS39_13485) | rny | 2916191..2917732 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS39_RS13490 (WIS39_13490) | recA | 2917908..2918954 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS39_RS13495 (WIS39_13495) | pgsA | 2919242..2919784 (-) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS39_RS13500 (WIS39_13500) | rimO | 2919771..2921105 (-) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS39_RS13505 (WIS39_13505) | mnmH | 2921099..2922157 (-) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS39_RS13510 (WIS39_13510) | - | 2922160..2924571 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS39_RS13515 (WIS39_13515) | - | 2924694..2925428 (-) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS39_RS13520 (WIS39_13520) | dapG | 2925541..2926764 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS39_RS13525 (WIS39_13525) | - | 2926774..2927019 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS39_RS13530 (WIS39_13530) | - | 2927054..2928301 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS39_RS13535 (WIS39_13535) | - | 2928459..2929202 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS39_RS13540 (WIS39_13540) | pnp | 2929468..2931579 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS39_RS13545 (WIS39_13545) | - | 2931704..2932549 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS39_RS13550 (WIS39_13550) | rpsO | 2932789..2933046 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS39_RS13555 (WIS39_13555) | - | 2933150..2934079 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS39_RS13560 (WIS39_13560) | truB | 2934210..2935115 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS39_RS13565 (WIS39_13565) | - | 2935128..2935433 (-) | 306 | Protein_2614 | DHHA1 domain-containing protein | - |
| WIS39_RS13570 (WIS39_13570) | tnpB | 2935551..2936669 (-) | 1119 | WP_339110676.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS39_RS13575 (WIS39_13575) | - | 2937319..2937996 (-) | 678 | Protein_2616 | DHH family phosphoesterase | - |
| WIS39_RS13580 (WIS39_13580) | rbfA | 2937977..2938357 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS39_RS13585 (WIS39_13585) | infB | 2938400..2940340 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS39_RS13590 (WIS39_13590) | - | 2940362..2940673 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS39_RS13595 (WIS39_13595) | - | 2940663..2940944 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS39_RS13600 (WIS39_13600) | nusA | 2940951..2942105 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS39_RS13605 (WIS39_13605) | rimP | 2942135..2942596 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961247 WIS39_RS13490 WP_003428218.1 2917908..2918954(-) (recA) [Clostridioides difficile strain Z1322HCD0031]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961247 WIS39_RS13490 WP_003428218.1 2917908..2918954(-) (recA) [Clostridioides difficile strain Z1322HCD0031]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.