Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR73_RS09675 | Genome accession | NZ_CP149750 |
| Coordinates | 2071802..2072848 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0033 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2026463..2096844 | 2071802..2072848 | within | 0 |
Gene organization within MGE regions
Location: 2026463..2096844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR73_RS09460 (WIR73_09460) | - | 2029350..2030336 (-) | 987 | WP_021359130.1 | phage tail protein | - |
| WIR73_RS09465 (WIR73_09465) | - | 2030337..2031035 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIR73_RS09470 (WIR73_09470) | - | 2031032..2032084 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIR73_RS09475 (WIR73_09475) | - | 2032077..2032505 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| WIR73_RS09480 (WIR73_09480) | - | 2032505..2032831 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIR73_RS09485 (WIR73_09485) | - | 2032847..2034376 (-) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| WIR73_RS09490 (WIR73_09490) | - | 2034658..2035080 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIR73_RS09495 (WIR73_09495) | - | 2035080..2037533 (-) | 2454 | WP_074139983.1 | hypothetical protein | - |
| WIR73_RS09500 (WIR73_09500) | - | 2037533..2037700 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIR73_RS09505 (WIR73_09505) | - | 2037727..2038173 (-) | 447 | WP_021366507.1 | phage XkdN-like family protein | - |
| WIR73_RS09510 (WIR73_09510) | - | 2038311..2038739 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIR73_RS09515 (WIR73_09515) | - | 2038753..2039817 (-) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR73_RS09520 (WIR73_09520) | - | 2039822..2040265 (-) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIR73_RS09525 (WIR73_09525) | - | 2040514..2040954 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR73_RS09530 (WIR73_09530) | - | 2041058..2041255 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR73_RS09535 (WIR73_09535) | - | 2041424..2041744 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR73_RS09540 (WIR73_09540) | - | 2041826..2042332 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR73_RS09545 (WIR73_09545) | - | 2043033..2043788 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR73_RS09550 (WIR73_09550) | - | 2043931..2044359 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR73_RS09555 (WIR73_09555) | - | 2044780..2044980 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR73_RS09560 (WIR73_09560) | - | 2045163..2046317 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR73_RS09565 (WIR73_09565) | - | 2046568..2047389 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIR73_RS09570 (WIR73_09570) | - | 2047465..2048853 (-) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIR73_RS09575 (WIR73_09575) | - | 2048988..2049746 (-) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR73_RS09580 (WIR73_09580) | - | 2049748..2050464 (-) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR73_RS09585 (WIR73_09585) | - | 2050466..2051173 (-) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR73_RS09590 (WIR73_09590) | - | 2051289..2051825 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR73_RS09595 (WIR73_09595) | - | 2051927..2052997 (-) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR73_RS09600 (WIR73_09600) | - | 2052990..2054048 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR73_RS09605 (WIR73_09605) | - | 2054035..2054367 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR73_RS09610 (WIR73_09610) | - | 2054566..2055687 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR73_RS09615 (WIR73_09615) | - | 2055815..2057713 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR73_RS09620 (WIR73_09620) | - | 2058028..2058804 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR73_RS09625 (WIR73_09625) | - | 2058896..2059648 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR73_RS09630 (WIR73_09630) | galT | 2059809..2060759 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR73_RS09635 (WIR73_09635) | - | 2061144..2062340 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR73_RS09640 (WIR73_09640) | - | 2062675..2063127 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR73_RS09645 (WIR73_09645) | purB | 2063439..2064884 (-) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIR73_RS09650 (WIR73_09650) | - | 2065028..2065936 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR73_RS09655 (WIR73_09655) | - | 2066193..2067017 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR73_RS09660 (WIR73_09660) | lepB | 2067057..2067587 (+) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIR73_RS09665 (WIR73_09665) | - | 2067669..2069450 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR73_RS09670 (WIR73_09670) | rny | 2070085..2071626 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR73_RS09675 (WIR73_09675) | recA | 2071802..2072848 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR73_RS09680 (WIR73_09680) | pgsA | 2073136..2073678 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR73_RS09685 (WIR73_09685) | rimO | 2073665..2074999 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR73_RS09690 (WIR73_09690) | mnmH | 2074993..2076051 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR73_RS09695 (WIR73_09695) | - | 2076054..2078465 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR73_RS09700 (WIR73_09700) | - | 2078588..2079322 (-) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR73_RS09705 (WIR73_09705) | dapG | 2079435..2080658 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR73_RS09710 (WIR73_09710) | - | 2080668..2080913 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR73_RS09715 (WIR73_09715) | - | 2080948..2082195 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR73_RS09720 (WIR73_09720) | - | 2082353..2083096 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR73_RS09725 (WIR73_09725) | pnp | 2083362..2085473 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR73_RS09730 (WIR73_09730) | - | 2085598..2086443 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR73_RS09735 (WIR73_09735) | rpsO | 2086683..2086940 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR73_RS09740 (WIR73_09740) | - | 2087044..2087973 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR73_RS09745 (WIR73_09745) | truB | 2088104..2089009 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR73_RS09750 (WIR73_09750) | - | 2089022..2089327 (-) | 306 | Protein_1937 | DHHA1 domain-containing protein | - |
| WIR73_RS09755 (WIR73_09755) | tnpB | 2089445..2090563 (-) | 1119 | WP_077715958.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR73_RS09760 (WIR73_09760) | - | 2091212..2091889 (-) | 678 | Protein_1939 | DHH family phosphoesterase | - |
| WIR73_RS09765 (WIR73_09765) | rbfA | 2091870..2092250 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR73_RS09770 (WIR73_09770) | infB | 2092293..2094233 (-) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIR73_RS09775 (WIR73_09775) | - | 2094255..2094566 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR73_RS09780 (WIR73_09780) | - | 2094556..2094837 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR73_RS09785 (WIR73_09785) | nusA | 2094844..2095998 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR73_RS09790 (WIR73_09790) | rimP | 2096028..2096489 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961226 WIR73_RS09675 WP_003428218.1 2071802..2072848(-) (recA) [Clostridioides difficile strain Z1322HCD0033]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961226 WIR73_RS09675 WP_003428218.1 2071802..2072848(-) (recA) [Clostridioides difficile strain Z1322HCD0033]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.