Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS33_RS13540 | Genome accession | NZ_CP149743 |
| Coordinates | 2897052..2898098 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0045 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2851713..2922094 | 2897052..2898098 | within | 0 |
Gene organization within MGE regions
Location: 2851713..2922094
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS33_RS13325 (WIS33_13325) | - | 2854600..2855586 (-) | 987 | WP_021359130.1 | phage tail protein | - |
| WIS33_RS13330 (WIS33_13330) | - | 2855587..2856285 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIS33_RS13335 (WIS33_13335) | - | 2856282..2857334 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS33_RS13340 (WIS33_13340) | - | 2857327..2857755 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| WIS33_RS13345 (WIS33_13345) | - | 2857755..2858081 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS33_RS13350 (WIS33_13350) | - | 2858097..2859626 (-) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| WIS33_RS13355 (WIS33_13355) | - | 2859908..2860330 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS33_RS13360 (WIS33_13360) | - | 2860330..2862783 (-) | 2454 | WP_074139983.1 | hypothetical protein | - |
| WIS33_RS13365 (WIS33_13365) | - | 2862783..2862950 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS33_RS13370 (WIS33_13370) | - | 2862977..2863423 (-) | 447 | WP_021366507.1 | phage XkdN-like family protein | - |
| WIS33_RS13375 (WIS33_13375) | - | 2863561..2863989 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS33_RS13380 (WIS33_13380) | - | 2864003..2865067 (-) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS33_RS13385 (WIS33_13385) | - | 2865072..2865515 (-) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIS33_RS13390 (WIS33_13390) | - | 2865764..2866204 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS33_RS13395 (WIS33_13395) | - | 2866308..2866505 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS33_RS13400 (WIS33_13400) | - | 2866674..2866994 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS33_RS13405 (WIS33_13405) | - | 2867076..2867582 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS33_RS13410 (WIS33_13410) | - | 2868283..2869038 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS33_RS13415 (WIS33_13415) | - | 2869181..2869609 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS33_RS13420 (WIS33_13420) | - | 2870030..2870230 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS33_RS13425 (WIS33_13425) | - | 2870413..2871567 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS33_RS13430 (WIS33_13430) | - | 2871818..2872639 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS33_RS13435 (WIS33_13435) | - | 2872715..2874103 (-) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIS33_RS13440 (WIS33_13440) | - | 2874238..2874996 (-) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS33_RS13445 (WIS33_13445) | - | 2874998..2875714 (-) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS33_RS13450 (WIS33_13450) | - | 2875716..2876423 (-) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS33_RS13455 (WIS33_13455) | - | 2876539..2877075 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS33_RS13460 (WIS33_13460) | - | 2877177..2878247 (-) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS33_RS13465 (WIS33_13465) | - | 2878240..2879298 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS33_RS13470 (WIS33_13470) | - | 2879285..2879617 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS33_RS13475 (WIS33_13475) | - | 2879816..2880937 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS33_RS13480 (WIS33_13480) | - | 2881065..2882963 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS33_RS13485 (WIS33_13485) | - | 2883278..2884054 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS33_RS13490 (WIS33_13490) | - | 2884146..2884898 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS33_RS13495 (WIS33_13495) | galT | 2885059..2886009 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS33_RS13500 (WIS33_13500) | - | 2886394..2887590 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS33_RS13505 (WIS33_13505) | - | 2887925..2888377 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS33_RS13510 (WIS33_13510) | purB | 2888689..2890134 (-) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIS33_RS13515 (WIS33_13515) | - | 2890278..2891186 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS33_RS13520 (WIS33_13520) | - | 2891443..2892267 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS33_RS13525 (WIS33_13525) | lepB | 2892307..2892837 (+) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIS33_RS13530 (WIS33_13530) | - | 2892919..2894700 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS33_RS13535 (WIS33_13535) | rny | 2895335..2896876 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS33_RS13540 (WIS33_13540) | recA | 2897052..2898098 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS33_RS13545 (WIS33_13545) | pgsA | 2898386..2898928 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS33_RS13550 (WIS33_13550) | rimO | 2898915..2900249 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS33_RS13555 (WIS33_13555) | mnmH | 2900243..2901301 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS33_RS13560 (WIS33_13560) | - | 2901304..2903715 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS33_RS13565 (WIS33_13565) | - | 2903838..2904572 (-) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS33_RS13570 (WIS33_13570) | dapG | 2904685..2905908 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS33_RS13575 (WIS33_13575) | - | 2905918..2906163 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS33_RS13580 (WIS33_13580) | - | 2906198..2907445 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS33_RS13585 (WIS33_13585) | - | 2907603..2908346 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS33_RS13590 (WIS33_13590) | pnp | 2908612..2910723 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS33_RS13595 (WIS33_13595) | - | 2910848..2911693 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS33_RS13600 (WIS33_13600) | rpsO | 2911933..2912190 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS33_RS13605 (WIS33_13605) | - | 2912294..2913223 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS33_RS13610 (WIS33_13610) | truB | 2913354..2914259 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS33_RS13615 (WIS33_13615) | - | 2914272..2914577 (-) | 306 | Protein_2623 | DHHA1 domain-containing protein | - |
| WIS33_RS13620 (WIS33_13620) | tnpB | 2914695..2915813 (-) | 1119 | WP_077723362.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS33_RS13625 (WIS33_13625) | - | 2916462..2917139 (-) | 678 | Protein_2625 | DHH family phosphoesterase | - |
| WIS33_RS13630 (WIS33_13630) | rbfA | 2917120..2917500 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS33_RS13635 (WIS33_13635) | infB | 2917543..2919483 (-) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIS33_RS13640 (WIS33_13640) | - | 2919505..2919816 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS33_RS13645 (WIS33_13645) | - | 2919806..2920087 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS33_RS13650 (WIS33_13650) | nusA | 2920094..2921248 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS33_RS13655 (WIS33_13655) | rimP | 2921278..2921739 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961166 WIS33_RS13540 WP_003428218.1 2897052..2898098(-) (recA) [Clostridioides difficile strain Z1322HCD0045]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961166 WIS33_RS13540 WP_003428218.1 2897052..2898098(-) (recA) [Clostridioides difficile strain Z1322HCD0045]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.