Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR93_RS05550 | Genome accession | NZ_CP149736 |
| Coordinates | 1259177..1260223 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0072 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1230805..1308017 | 1259177..1260223 | within | 0 |
Gene organization within MGE regions
Location: 1230805..1308017
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR93_RS05435 (WIR93_05435) | acd | 1230880..1232703 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIR93_RS05440 (WIR93_05440) | - | 1232918..1237216 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIR93_RS05445 (WIR93_05445) | rimP | 1237420..1237881 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR93_RS05450 (WIR93_05450) | nusA | 1237911..1239065 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR93_RS05455 (WIR93_05455) | - | 1239072..1239353 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR93_RS05460 (WIR93_05460) | - | 1239343..1239654 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR93_RS05465 (WIR93_05465) | infB | 1239676..1241616 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIR93_RS05470 (WIR93_05470) | rbfA | 1241659..1242039 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR93_RS05475 (WIR93_05475) | - | 1242020..1243003 (+) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIR93_RS05480 (WIR93_05480) | truB | 1243016..1243921 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR93_RS05485 (WIR93_05485) | - | 1244052..1244981 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR93_RS05490 (WIR93_05490) | rpsO | 1245085..1245342 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR93_RS05495 (WIR93_05495) | - | 1245582..1246427 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR93_RS05500 (WIR93_05500) | pnp | 1246552..1248663 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR93_RS05505 (WIR93_05505) | - | 1248929..1249672 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR93_RS05510 (WIR93_05510) | - | 1249830..1251077 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR93_RS05515 (WIR93_05515) | - | 1251112..1251357 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR93_RS05520 (WIR93_05520) | dapG | 1251367..1252590 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR93_RS05525 (WIR93_05525) | - | 1252703..1253437 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR93_RS05530 (WIR93_05530) | - | 1253560..1255971 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR93_RS05535 (WIR93_05535) | mnmH | 1255974..1257032 (+) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR93_RS05540 (WIR93_05540) | rimO | 1257026..1258360 (+) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR93_RS05545 (WIR93_05545) | pgsA | 1258347..1258889 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR93_RS05550 (WIR93_05550) | recA | 1259177..1260223 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR93_RS05555 (WIR93_05555) | rny | 1260399..1261940 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR93_RS05560 (WIR93_05560) | - | 1262254..1264590 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIR93_RS05565 (WIR93_05565) | - | 1264972..1266753 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR93_RS05570 (WIR93_05570) | lepB | 1266835..1267365 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIR93_RS05575 (WIR93_05575) | - | 1267405..1268229 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR93_RS05580 (WIR93_05580) | - | 1268486..1269394 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR93_RS05585 (WIR93_05585) | purB | 1269538..1270983 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIR93_RS05590 (WIR93_05590) | - | 1271294..1271746 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR93_RS05595 (WIR93_05595) | - | 1272081..1273277 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR93_RS05600 (WIR93_05600) | galT | 1273662..1274612 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR93_RS05605 (WIR93_05605) | - | 1274773..1275525 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR93_RS05610 (WIR93_05610) | - | 1275617..1276393 (-) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIR93_RS05615 (WIR93_05615) | - | 1276708..1278606 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR93_RS05620 (WIR93_05620) | - | 1278734..1279855 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR93_RS05625 (WIR93_05625) | - | 1280054..1280386 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR93_RS05630 (WIR93_05630) | - | 1280373..1281431 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR93_RS05635 (WIR93_05635) | - | 1281424..1282494 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR93_RS05640 (WIR93_05640) | - | 1282596..1283132 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR93_RS05645 (WIR93_05645) | - | 1283248..1283955 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR93_RS05650 (WIR93_05650) | - | 1283957..1284673 (+) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR93_RS05655 (WIR93_05655) | - | 1284675..1285433 (+) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR93_RS05660 (WIR93_05660) | - | 1285568..1286956 (+) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIR93_RS05665 (WIR93_05665) | - | 1287032..1287853 (-) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIR93_RS05670 (WIR93_05670) | - | 1288104..1289258 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR93_RS05675 (WIR93_05675) | - | 1289441..1289641 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR93_RS05680 (WIR93_05680) | - | 1290062..1290490 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR93_RS05685 (WIR93_05685) | - | 1290633..1291388 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR93_RS05690 (WIR93_05690) | - | 1292089..1292595 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR93_RS05695 (WIR93_05695) | - | 1292677..1292997 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR93_RS05700 (WIR93_05700) | - | 1293166..1293363 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR93_RS05705 (WIR93_05705) | - | 1293468..1293908 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR93_RS05710 (WIR93_05710) | - | 1294157..1294600 (+) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIR93_RS05715 (WIR93_05715) | - | 1294605..1295669 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR93_RS05720 (WIR93_05720) | - | 1295683..1296111 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIR93_RS05725 (WIR93_05725) | - | 1296225..1296671 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIR93_RS05730 (WIR93_05730) | - | 1296698..1296865 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIR93_RS05735 (WIR93_05735) | - | 1296865..1299318 (+) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIR93_RS05740 (WIR93_05740) | - | 1299318..1299740 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIR93_RS05745 (WIR93_05745) | - | 1300022..1301551 (+) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIR93_RS05750 (WIR93_05750) | - | 1301567..1301893 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIR93_RS05755 (WIR93_05755) | - | 1301893..1302321 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIR93_RS05760 (WIR93_05760) | - | 1302314..1303366 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIR93_RS05765 (WIR93_05765) | - | 1303363..1304061 (+) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIR93_RS05770 (WIR93_05770) | - | 1304062..1305045 (+) | 984 | WP_003438452.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961112 WIR93_RS05550 WP_003428218.1 1259177..1260223(+) (recA) [Clostridioides difficile strain Z1322HCD0072]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961112 WIR93_RS05550 WP_003428218.1 1259177..1260223(+) (recA) [Clostridioides difficile strain Z1322HCD0072]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.