Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS07_RS15730 | Genome accession | NZ_CP149727 |
| Coordinates | 3497127..3498173 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0094 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3464995..3545981 | 3497127..3498173 | within | 0 |
Gene organization within MGE regions
Location: 3464995..3545981
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS07_RS15600 (WIS07_15600) | acd | 3465070..3466893 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIS07_RS15605 (WIS07_15605) | - | 3467108..3471406 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS07_RS15610 (WIS07_15610) | rimP | 3471610..3472071 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS07_RS15615 (WIS07_15615) | nusA | 3472101..3473255 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS07_RS15620 (WIS07_15620) | - | 3473262..3473543 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS07_RS15625 (WIS07_15625) | - | 3473533..3473844 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS07_RS15630 (WIS07_15630) | infB | 3473866..3475806 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS07_RS15635 (WIS07_15635) | rbfA | 3475849..3476229 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS07_RS15640 (WIS07_15640) | - | 3476210..3476887 (+) | 678 | Protein_3105 | DHH family phosphoesterase | - |
| WIS07_RS15645 (WIS07_15645) | tnpB | 3477536..3478654 (+) | 1119 | WP_339072203.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS07_RS15650 (WIS07_15650) | - | 3478772..3479077 (+) | 306 | Protein_3107 | DHHA1 domain-containing protein | - |
| WIS07_RS15655 (WIS07_15655) | truB | 3479090..3479995 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS07_RS15660 (WIS07_15660) | - | 3480126..3481055 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS07_RS15665 (WIS07_15665) | rpsO | 3481159..3481416 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS07_RS15670 (WIS07_15670) | - | 3481656..3482501 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS07_RS15675 (WIS07_15675) | pnp | 3482626..3484737 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS07_RS15680 (WIS07_15680) | - | 3485003..3485746 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS07_RS15685 (WIS07_15685) | - | 3485904..3487151 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS07_RS15690 (WIS07_15690) | - | 3487186..3487431 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS07_RS15695 (WIS07_15695) | dapG | 3487441..3488664 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS07_RS15700 (WIS07_15700) | tnpB | 3489453..3490571 (+) | 1119 | WP_339072209.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS07_RS15705 (WIS07_15705) | - | 3490758..3491387 (+) | 630 | WP_021363436.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS07_RS15710 (WIS07_15710) | - | 3491510..3493921 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS07_RS15715 (WIS07_15715) | mnmH | 3493924..3494982 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS07_RS15720 (WIS07_15720) | rimO | 3494976..3496310 (+) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS07_RS15725 (WIS07_15725) | pgsA | 3496297..3496839 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS07_RS15730 (WIS07_15730) | recA | 3497127..3498173 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS07_RS15735 (WIS07_15735) | rny | 3498349..3499890 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS07_RS15740 (WIS07_15740) | - | 3500204..3502540 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS07_RS15745 (WIS07_15745) | - | 3502922..3504703 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS07_RS15750 (WIS07_15750) | lepB | 3504785..3505315 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS07_RS15755 (WIS07_15755) | - | 3505355..3506179 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS07_RS15760 (WIS07_15760) | - | 3506436..3507344 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS07_RS15765 (WIS07_15765) | purB | 3507488..3508933 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS07_RS15770 (WIS07_15770) | - | 3509244..3509696 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS07_RS15775 (WIS07_15775) | - | 3510031..3511227 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS07_RS15780 (WIS07_15780) | galT | 3511612..3512562 (+) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS07_RS15785 (WIS07_15785) | - | 3512723..3513475 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS07_RS15790 (WIS07_15790) | - | 3513567..3514343 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS07_RS15795 (WIS07_15795) | - | 3514658..3516556 (+) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| WIS07_RS15800 (WIS07_15800) | - | 3516684..3517805 (-) | 1122 | WP_003428201.1 | glycosyltransferase | - |
| WIS07_RS15805 (WIS07_15805) | - | 3518004..3518336 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS07_RS15810 (WIS07_15810) | - | 3518323..3519381 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS07_RS15815 (WIS07_15815) | - | 3519374..3520444 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS07_RS15820 (WIS07_15820) | - | 3520546..3521082 (+) | 537 | WP_075052540.1 | hypothetical protein | - |
| WIS07_RS15825 (WIS07_15825) | - | 3521198..3521905 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS07_RS15830 (WIS07_15830) | - | 3521907..3522623 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS07_RS15835 (WIS07_15835) | - | 3522625..3523383 (+) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS07_RS15840 (WIS07_15840) | - | 3523518..3524906 (+) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| WIS07_RS15845 (WIS07_15845) | - | 3524982..3525803 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS07_RS15850 (WIS07_15850) | - | 3526054..3527208 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| WIS07_RS15855 (WIS07_15855) | - | 3527391..3527591 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS07_RS15860 (WIS07_15860) | - | 3528012..3528440 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS07_RS15865 (WIS07_15865) | - | 3528583..3529338 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS07_RS15870 (WIS07_15870) | - | 3530039..3530545 (-) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIS07_RS15875 (WIS07_15875) | - | 3530627..3530947 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS07_RS15880 (WIS07_15880) | - | 3531116..3531313 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS07_RS15885 (WIS07_15885) | - | 3531417..3531857 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS07_RS15890 (WIS07_15890) | - | 3532106..3532549 (+) | 444 | WP_159376150.1 | DUF6838 family protein | - |
| WIS07_RS15895 (WIS07_15895) | - | 3532554..3533618 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS07_RS15900 (WIS07_15900) | - | 3533632..3534060 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS07_RS15905 (WIS07_15905) | - | 3534186..3534632 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS07_RS15910 (WIS07_15910) | - | 3534659..3534826 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS07_RS15915 (WIS07_15915) | - | 3534826..3537279 (+) | 2454 | WP_159376151.1 | hypothetical protein | - |
| WIS07_RS15920 (WIS07_15920) | - | 3537279..3537701 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS07_RS15925 (WIS07_15925) | - | 3537983..3539512 (+) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| WIS07_RS15930 (WIS07_15930) | - | 3539528..3539854 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS07_RS15935 (WIS07_15935) | - | 3539854..3540282 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS07_RS15940 (WIS07_15940) | - | 3540275..3541327 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS07_RS15945 (WIS07_15945) | - | 3541324..3542022 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIS07_RS15950 (WIS07_15950) | - | 3542023..3543006 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961035 WIS07_RS15730 WP_003428218.1 3497127..3498173(+) (recA) [Clostridioides difficile strain Z1322HCD0094]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961035 WIS07_RS15730 WP_003428218.1 3497127..3498173(+) (recA) [Clostridioides difficile strain Z1322HCD0094]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.