Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS19_RS05920 | Genome accession | NZ_CP149713 |
| Coordinates | 1301695..1302741 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0116 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1275638..1336360 | 1301695..1302741 | within | 0 |
Gene organization within MGE regions
Location: 1275638..1336360
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS19_RS05805 (WIS19_05805) | rimP | 1278054..1278515 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS19_RS05810 (WIS19_05810) | nusA | 1278545..1279699 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS19_RS05815 (WIS19_05815) | - | 1279706..1279987 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS19_RS05820 (WIS19_05820) | - | 1279977..1280288 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS19_RS05825 (WIS19_05825) | infB | 1280310..1282250 (+) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIS19_RS05830 (WIS19_05830) | rbfA | 1282293..1282673 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS19_RS05835 (WIS19_05835) | - | 1282654..1283331 (+) | 678 | Protein_1118 | DHH family phosphoesterase | - |
| WIS19_RS05840 (WIS19_05840) | tnpB | 1283980..1285098 (+) | 1119 | WP_077723362.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS19_RS05845 (WIS19_05845) | - | 1285216..1285521 (+) | 306 | Protein_1120 | DHHA1 domain-containing protein | - |
| WIS19_RS05850 (WIS19_05850) | truB | 1285534..1286439 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS19_RS05855 (WIS19_05855) | - | 1286570..1287499 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS19_RS05860 (WIS19_05860) | rpsO | 1287603..1287860 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS19_RS05865 (WIS19_05865) | - | 1288100..1288945 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS19_RS05870 (WIS19_05870) | pnp | 1289070..1291181 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS19_RS05875 (WIS19_05875) | - | 1291447..1292190 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS19_RS05880 (WIS19_05880) | - | 1292348..1293595 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS19_RS05885 (WIS19_05885) | - | 1293630..1293875 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS19_RS05890 (WIS19_05890) | dapG | 1293885..1295108 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS19_RS05895 (WIS19_05895) | - | 1295221..1295955 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS19_RS05900 (WIS19_05900) | - | 1296078..1298489 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS19_RS05905 (WIS19_05905) | mnmH | 1298492..1299550 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS19_RS05910 (WIS19_05910) | rimO | 1299544..1300878 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS19_RS05915 (WIS19_05915) | pgsA | 1300865..1301407 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS19_RS05920 (WIS19_05920) | recA | 1301695..1302741 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS19_RS05925 (WIS19_05925) | rny | 1302917..1304458 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS19_RS05930 (WIS19_05930) | - | 1305093..1306874 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS19_RS05935 (WIS19_05935) | lepB | 1306956..1307486 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIS19_RS05940 (WIS19_05940) | - | 1307526..1308350 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS19_RS05945 (WIS19_05945) | - | 1308607..1309515 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS19_RS05950 (WIS19_05950) | purB | 1309659..1311104 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIS19_RS05955 (WIS19_05955) | - | 1311416..1311868 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS19_RS05960 (WIS19_05960) | - | 1312203..1313399 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS19_RS05965 (WIS19_05965) | galT | 1313784..1314734 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS19_RS05970 (WIS19_05970) | - | 1314895..1315647 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS19_RS05975 (WIS19_05975) | - | 1315739..1316515 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS19_RS05980 (WIS19_05980) | - | 1316830..1318728 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS19_RS05985 (WIS19_05985) | - | 1318856..1319977 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS19_RS05990 (WIS19_05990) | - | 1320176..1320508 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS19_RS05995 (WIS19_05995) | - | 1320495..1321553 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS19_RS06000 (WIS19_06000) | - | 1321546..1322616 (+) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS19_RS06005 (WIS19_06005) | - | 1322718..1323254 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS19_RS06010 (WIS19_06010) | - | 1323370..1324077 (+) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS19_RS06015 (WIS19_06015) | - | 1324079..1324795 (+) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS19_RS06020 (WIS19_06020) | - | 1324797..1325555 (+) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS19_RS06025 (WIS19_06025) | - | 1325690..1327078 (+) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIS19_RS06030 (WIS19_06030) | - | 1327154..1327975 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS19_RS06035 (WIS19_06035) | - | 1328226..1329380 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS19_RS06040 (WIS19_06040) | - | 1329563..1329763 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS19_RS06045 (WIS19_06045) | - | 1330184..1330612 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS19_RS06050 (WIS19_06050) | - | 1330755..1331510 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS19_RS06055 (WIS19_06055) | - | 1332211..1332717 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS19_RS06060 (WIS19_06060) | - | 1332799..1333119 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS19_RS06065 (WIS19_06065) | - | 1333288..1333485 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS19_RS06070 (WIS19_06070) | - | 1333589..1334029 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS19_RS06075 (WIS19_06075) | - | 1334278..1334721 (+) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIS19_RS06080 (WIS19_06080) | - | 1334726..1335790 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS19_RS06085 (WIS19_06085) | - | 1335804..1336232 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960928 WIS19_RS05920 WP_003428218.1 1301695..1302741(+) (recA) [Clostridioides difficile strain Z1322HCD0116]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960928 WIS19_RS05920 WP_003428218.1 1301695..1302741(+) (recA) [Clostridioides difficile strain Z1322HCD0116]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.