Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR89_RS11745 | Genome accession | NZ_CP149711 |
| Coordinates | 2628162..2629208 (-) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain Z1322PCD0001 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2581913..2647564 | 2628162..2629208 | within | 0 |
Gene organization within MGE regions
Location: 2581913..2647564
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR89_RS11520 (WIR89_11520) | - | 2582564..2583262 (-) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIR89_RS11525 (WIR89_11525) | - | 2583259..2584311 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIR89_RS11530 (WIR89_11530) | - | 2584304..2584732 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIR89_RS11535 (WIR89_11535) | - | 2584732..2585058 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIR89_RS11540 (WIR89_11540) | - | 2585074..2586603 (-) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| WIR89_RS11545 (WIR89_11545) | - | 2586885..2587307 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIR89_RS11550 (WIR89_11550) | - | 2587307..2589760 (-) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIR89_RS11555 (WIR89_11555) | - | 2589760..2589927 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIR89_RS11560 (WIR89_11560) | - | 2589954..2590400 (-) | 447 | WP_009902432.1 | phage portal protein | - |
| WIR89_RS11565 (WIR89_11565) | - | 2590526..2590954 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIR89_RS11570 (WIR89_11570) | - | 2590968..2592032 (-) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR89_RS11575 (WIR89_11575) | - | 2592037..2592480 (-) | 444 | WP_009896258.1 | DUF6838 family protein | - |
| WIR89_RS11580 (WIR89_11580) | - | 2592729..2593169 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR89_RS11585 (WIR89_11585) | - | 2593274..2593471 (-) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| WIR89_RS11590 (WIR89_11590) | - | 2593640..2593960 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR89_RS11595 (WIR89_11595) | - | 2594042..2594548 (+) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIR89_RS11600 (WIR89_11600) | - | 2595249..2596004 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR89_RS11605 (WIR89_11605) | - | 2596147..2596575 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR89_RS11610 (WIR89_11610) | - | 2596996..2597196 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR89_RS11615 (WIR89_11615) | - | 2597379..2598533 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR89_RS11620 (WIR89_11620) | - | 2598784..2599605 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIR89_RS11625 (WIR89_11625) | - | 2599681..2601069 (-) | 1389 | WP_011861185.1 | two-component system sensor histidine kinase | - |
| WIR89_RS11630 (WIR89_11630) | - | 2601204..2601962 (-) | 759 | WP_021421479.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR89_RS11635 (WIR89_11635) | - | 2601964..2602680 (-) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR89_RS11640 (WIR89_11640) | - | 2602682..2603389 (-) | 708 | WP_021363440.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR89_RS11645 (WIR89_11645) | - | 2603505..2604041 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR89_RS11650 (WIR89_11650) | - | 2604143..2605213 (-) | 1071 | WP_009896243.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR89_RS11655 (WIR89_11655) | - | 2605206..2606264 (-) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| WIR89_RS11660 (WIR89_11660) | - | 2606251..2606583 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR89_RS11665 (WIR89_11665) | - | 2606782..2607903 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR89_RS11670 (WIR89_11670) | - | 2608031..2609929 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR89_RS11675 (WIR89_11675) | - | 2610244..2611020 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR89_RS11680 (WIR89_11680) | - | 2611112..2611864 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR89_RS11685 (WIR89_11685) | galT | 2612025..2612975 (-) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR89_RS11690 (WIR89_11690) | - | 2613360..2614556 (+) | 1197 | WP_074105864.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR89_RS11695 (WIR89_11695) | - | 2614668..2616014 (-) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| WIR89_RS11700 (WIR89_11700) | - | 2616147..2616899 (-) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| WIR89_RS11705 (WIR89_11705) | - | 2617047..2618624 (-) | 1578 | WP_009902415.1 | PTS transporter subunit EIIC | - |
| WIR89_RS11710 (WIR89_11710) | - | 2619036..2619488 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR89_RS11715 (WIR89_11715) | purB | 2619799..2621244 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIR89_RS11720 (WIR89_11720) | - | 2621388..2622296 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR89_RS11725 (WIR89_11725) | - | 2622553..2623377 (+) | 825 | WP_074105863.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR89_RS11730 (WIR89_11730) | lepB | 2623417..2623947 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIR89_RS11735 (WIR89_11735) | - | 2624029..2625810 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR89_RS11740 (WIR89_11740) | rny | 2626445..2627986 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR89_RS11745 (WIR89_11745) | recA | 2628162..2629208 (-) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| WIR89_RS11750 (WIR89_11750) | pgsA | 2629496..2630038 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR89_RS11755 (WIR89_11755) | rimO | 2630025..2631359 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR89_RS11760 (WIR89_11760) | mnmH | 2631353..2632411 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR89_RS11765 (WIR89_11765) | - | 2632414..2634825 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR89_RS11770 (WIR89_11770) | - | 2634948..2635682 (-) | 735 | WP_021364422.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR89_RS11775 (WIR89_11775) | dapG | 2635795..2637018 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR89_RS11780 (WIR89_11780) | - | 2637028..2637273 (-) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| WIR89_RS11785 (WIR89_11785) | - | 2637308..2638555 (-) | 1248 | WP_009902409.1 | pitrilysin family protein | - |
| WIR89_RS11790 (WIR89_11790) | - | 2638713..2639456 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR89_RS11795 (WIR89_11795) | pnp | 2639722..2641833 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR89_RS11800 (WIR89_11800) | - | 2641958..2642803 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR89_RS11805 (WIR89_11805) | rpsO | 2643043..2643300 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR89_RS11810 (WIR89_11810) | - | 2643404..2644333 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR89_RS11815 (WIR89_11815) | truB | 2644464..2645369 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR89_RS11820 (WIR89_11820) | - | 2645382..2645687 (-) | 306 | Protein_2353 | DHHA1 domain-containing protein | - |
| WIR89_RS11825 (WIR89_11825) | tnpB | 2645805..2646923 (-) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=960916 WIR89_RS11745 WP_021364420.1 2628162..2629208(-) (recA) [Clostridioides difficile strain Z1322PCD0001]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960916 WIR89_RS11745 WP_021364420.1 2628162..2629208(-) (recA) [Clostridioides difficile strain Z1322PCD0001]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.