Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS27_RS07245 | Genome accession | NZ_CP149708 |
| Coordinates | 1572912..1573958 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0012 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1525118..1602328 | 1572912..1573958 | within | 0 |
Gene organization within MGE regions
Location: 1525118..1602328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS27_RS07020 (WIS27_07020) | - | 1525516..1528074 (-) | 2559 | WP_339076595.1 | hypothetical protein | - |
| WIS27_RS07025 (WIS27_07025) | - | 1528091..1529074 (-) | 984 | WP_003438452.1 | phage tail protein | - |
| WIS27_RS07030 (WIS27_07030) | - | 1529075..1529773 (-) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIS27_RS07035 (WIS27_07035) | - | 1529770..1530822 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS27_RS07040 (WIS27_07040) | - | 1530815..1531243 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS27_RS07045 (WIS27_07045) | - | 1531243..1531569 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS27_RS07050 (WIS27_07050) | - | 1531585..1533114 (-) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIS27_RS07055 (WIS27_07055) | - | 1533396..1533818 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS27_RS07060 (WIS27_07060) | - | 1533818..1536271 (-) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIS27_RS07065 (WIS27_07065) | - | 1536271..1536438 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS27_RS07070 (WIS27_07070) | - | 1536465..1536911 (-) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS27_RS07075 (WIS27_07075) | - | 1537025..1537453 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS27_RS07080 (WIS27_07080) | - | 1537467..1538531 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS27_RS07085 (WIS27_07085) | - | 1538536..1538979 (-) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIS27_RS07090 (WIS27_07090) | - | 1539228..1539668 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS27_RS07095 (WIS27_07095) | - | 1539773..1539970 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS27_RS07100 (WIS27_07100) | - | 1540139..1540459 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS27_RS07105 (WIS27_07105) | - | 1540541..1541047 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS27_RS07110 (WIS27_07110) | - | 1541748..1542503 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS27_RS07115 (WIS27_07115) | - | 1542646..1543074 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS27_RS07120 (WIS27_07120) | - | 1543495..1543695 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS27_RS07125 (WIS27_07125) | - | 1543878..1545046 (-) | 1169 | Protein_1419 | amidase domain-containing protein | - |
| WIS27_RS07130 (WIS27_07130) | - | 1545282..1546103 (+) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIS27_RS07135 (WIS27_07135) | - | 1546179..1547567 (-) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIS27_RS07140 (WIS27_07140) | - | 1547702..1548460 (-) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS27_RS07145 (WIS27_07145) | - | 1548462..1549178 (-) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS27_RS07150 (WIS27_07150) | - | 1549180..1549887 (-) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS27_RS07155 (WIS27_07155) | - | 1550003..1550539 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS27_RS07160 (WIS27_07160) | - | 1550641..1551711 (-) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS27_RS07165 (WIS27_07165) | - | 1551704..1552762 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS27_RS07170 (WIS27_07170) | - | 1552749..1553081 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS27_RS07175 (WIS27_07175) | - | 1553280..1554401 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS27_RS07180 (WIS27_07180) | - | 1554529..1556427 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS27_RS07185 (WIS27_07185) | - | 1556742..1557518 (+) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIS27_RS07190 (WIS27_07190) | - | 1557610..1558362 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS27_RS07195 (WIS27_07195) | galT | 1558523..1559473 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS27_RS07200 (WIS27_07200) | - | 1559858..1561054 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS27_RS07205 (WIS27_07205) | - | 1561389..1561841 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS27_RS07210 (WIS27_07210) | purB | 1562152..1563597 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS27_RS07215 (WIS27_07215) | - | 1563741..1564649 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS27_RS07220 (WIS27_07220) | - | 1564906..1565730 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS27_RS07225 (WIS27_07225) | lepB | 1565770..1566300 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS27_RS07230 (WIS27_07230) | - | 1566382..1568163 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS27_RS07235 (WIS27_07235) | - | 1568545..1570881 (-) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS27_RS07240 (WIS27_07240) | rny | 1571195..1572736 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS27_RS07245 (WIS27_07245) | recA | 1572912..1573958 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS27_RS07250 (WIS27_07250) | pgsA | 1574246..1574788 (-) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS27_RS07255 (WIS27_07255) | rimO | 1574775..1576109 (-) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS27_RS07260 (WIS27_07260) | mnmH | 1576103..1577161 (-) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS27_RS07265 (WIS27_07265) | - | 1577164..1579599 (-) | 2436 | WP_052447067.1 | DNA translocase FtsK | - |
| WIS27_RS07270 (WIS27_07270) | - | 1579697..1580430 (-) | 734 | Protein_1448 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS27_RS07275 (WIS27_07275) | dapG | 1580543..1581766 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS27_RS07280 (WIS27_07280) | - | 1581776..1582021 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS27_RS07285 (WIS27_07285) | - | 1582056..1583303 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS27_RS07290 (WIS27_07290) | - | 1583461..1584204 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS27_RS07295 (WIS27_07295) | pnp | 1584470..1586581 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS27_RS07300 (WIS27_07300) | - | 1586706..1587551 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS27_RS07305 (WIS27_07305) | rpsO | 1587791..1588048 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS27_RS07310 (WIS27_07310) | - | 1588152..1589081 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS27_RS07315 (WIS27_07315) | truB | 1589212..1590117 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS27_RS07320 (WIS27_07320) | - | 1590130..1591113 (-) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIS27_RS07325 (WIS27_07325) | rbfA | 1591094..1591474 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS27_RS07330 (WIS27_07330) | infB | 1591517..1593457 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS27_RS07335 (WIS27_07335) | - | 1593479..1593790 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS27_RS07340 (WIS27_07340) | - | 1593780..1594061 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS27_RS07345 (WIS27_07345) | nusA | 1594068..1595222 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS27_RS07350 (WIS27_07350) | rimP | 1595252..1595713 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS27_RS07355 (WIS27_07355) | - | 1595917..1600215 (-) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS27_RS07360 (WIS27_07360) | acd | 1600430..1602253 (-) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960893 WIS27_RS07245 WP_003428218.1 1572912..1573958(-) (recA) [Clostridioides difficile strain Z1322PCD0012]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960893 WIS27_RS07245 WP_003428218.1 1572912..1573958(-) (recA) [Clostridioides difficile strain Z1322PCD0012]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.