Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS01_RS05790 | Genome accession | NZ_CP149706 |
| Coordinates | 1267296..1268342 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0018 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1241242..1301957 | 1267296..1268342 | within | 0 |
Gene organization within MGE regions
Location: 1241242..1301957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS01_RS05675 (WIS01_05675) | rimP | 1243658..1244119 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS01_RS05680 (WIS01_05680) | nusA | 1244149..1245303 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS01_RS05685 (WIS01_05685) | - | 1245310..1245591 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS01_RS05690 (WIS01_05690) | - | 1245581..1245892 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS01_RS05695 (WIS01_05695) | infB | 1245914..1247854 (+) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIS01_RS05700 (WIS01_05700) | rbfA | 1247897..1248277 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS01_RS05705 (WIS01_05705) | - | 1248258..1248935 (+) | 678 | Protein_1113 | DHH family phosphoesterase | - |
| WIS01_RS05710 (WIS01_05710) | tnpB | 1249584..1250702 (+) | 1119 | WP_077723362.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS01_RS05715 (WIS01_05715) | - | 1250820..1251125 (+) | 306 | Protein_1115 | DHHA1 domain-containing protein | - |
| WIS01_RS05720 (WIS01_05720) | truB | 1251138..1252043 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS01_RS05725 (WIS01_05725) | - | 1252174..1253103 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS01_RS05730 (WIS01_05730) | rpsO | 1253207..1253464 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS01_RS05735 (WIS01_05735) | - | 1253704..1254549 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS01_RS05740 (WIS01_05740) | pnp | 1254674..1256785 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS01_RS05745 (WIS01_05745) | - | 1257051..1257794 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS01_RS05750 (WIS01_05750) | - | 1257952..1259199 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS01_RS05755 (WIS01_05755) | - | 1259234..1259479 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS01_RS05760 (WIS01_05760) | dapG | 1259489..1260712 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS01_RS05765 (WIS01_05765) | - | 1260825..1261558 (+) | 734 | Protein_1125 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS01_RS05770 (WIS01_05770) | - | 1261820..1264090 (+) | 2271 | WP_339078839.1 | DNA translocase FtsK | - |
| WIS01_RS05775 (WIS01_05775) | mnmH | 1264093..1265151 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS01_RS05780 (WIS01_05780) | rimO | 1265145..1266479 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS01_RS05785 (WIS01_05785) | pgsA | 1266466..1267008 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS01_RS05790 (WIS01_05790) | recA | 1267296..1268342 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS01_RS05795 (WIS01_05795) | rny | 1268518..1270059 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS01_RS05800 (WIS01_05800) | - | 1270694..1272475 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS01_RS05805 (WIS01_05805) | lepB | 1272557..1273087 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIS01_RS05810 (WIS01_05810) | - | 1273127..1273951 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS01_RS05815 (WIS01_05815) | - | 1274208..1275116 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS01_RS05820 (WIS01_05820) | purB | 1275260..1276705 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIS01_RS05825 (WIS01_05825) | - | 1277017..1277469 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS01_RS05830 (WIS01_05830) | - | 1277804..1279000 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS01_RS05835 (WIS01_05835) | - | 1279385..1280041 (+) | 657 | WP_339078811.1 | DUF4931 domain-containing protein | - |
| WIS01_RS05840 (WIS01_05840) | - | 1279999..1280334 (+) | 336 | WP_339078812.1 | hypothetical protein | - |
| WIS01_RS05845 (WIS01_05845) | - | 1280495..1281247 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS01_RS05850 (WIS01_05850) | - | 1281339..1282115 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS01_RS05855 (WIS01_05855) | - | 1282430..1284328 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS01_RS05860 (WIS01_05860) | - | 1284456..1285577 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS01_RS05865 (WIS01_05865) | - | 1285776..1286108 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS01_RS05870 (WIS01_05870) | - | 1286095..1287153 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS01_RS05875 (WIS01_05875) | - | 1287146..1288216 (+) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS01_RS05880 (WIS01_05880) | - | 1288318..1288854 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS01_RS05885 (WIS01_05885) | - | 1288969..1289676 (+) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS01_RS05890 (WIS01_05890) | - | 1289678..1290394 (+) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS01_RS05895 (WIS01_05895) | - | 1290396..1291154 (+) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS01_RS05900 (WIS01_05900) | - | 1291289..1292677 (+) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIS01_RS05905 (WIS01_05905) | - | 1292752..1293558 (-) | 807 | Protein_1153 | pyridoxamine kinase | - |
| WIS01_RS05910 (WIS01_05910) | - | 1293823..1294977 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS01_RS05915 (WIS01_05915) | - | 1295160..1295360 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS01_RS05920 (WIS01_05920) | - | 1295781..1296209 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS01_RS05925 (WIS01_05925) | - | 1296352..1297107 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS01_RS05930 (WIS01_05930) | - | 1297808..1298314 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS01_RS05935 (WIS01_05935) | - | 1298396..1298716 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS01_RS05940 (WIS01_05940) | - | 1298885..1299082 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS01_RS05945 (WIS01_05945) | - | 1299186..1299626 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS01_RS05950 (WIS01_05950) | - | 1299875..1300318 (+) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIS01_RS05955 (WIS01_05955) | - | 1300323..1301387 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS01_RS05960 (WIS01_05960) | - | 1301401..1301829 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960878 WIS01_RS05790 WP_003428218.1 1267296..1268342(+) (recA) [Clostridioides difficile strain Z1322PCD0018]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960878 WIS01_RS05790 WP_003428218.1 1267296..1268342(+) (recA) [Clostridioides difficile strain Z1322PCD0018]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.