Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR61_RS10520 | Genome accession | NZ_CP149703 |
| Coordinates | 2378914..2379960 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0024 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2331106..2412092 | 2378914..2379960 | within | 0 |
Gene organization within MGE regions
Location: 2331106..2412092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR61_RS10300 (WIR61_10300) | - | 2334081..2335064 (-) | 984 | WP_021366456.1 | phage tail protein | - |
| WIR61_RS10305 (WIR61_10305) | - | 2335065..2335763 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIR61_RS10310 (WIR61_10310) | - | 2335760..2336812 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIR61_RS10315 (WIR61_10315) | - | 2336805..2337233 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIR61_RS10320 (WIR61_10320) | - | 2337233..2337559 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIR61_RS10325 (WIR61_10325) | - | 2337575..2339104 (-) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| WIR61_RS10330 (WIR61_10330) | - | 2339386..2339808 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIR61_RS10335 (WIR61_10335) | - | 2339808..2342261 (-) | 2454 | WP_159376151.1 | hypothetical protein | - |
| WIR61_RS10340 (WIR61_10340) | - | 2342261..2342428 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIR61_RS10345 (WIR61_10345) | - | 2342455..2342901 (-) | 447 | WP_003419647.1 | phage portal protein | - |
| WIR61_RS10350 (WIR61_10350) | - | 2343027..2343455 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIR61_RS10355 (WIR61_10355) | - | 2343469..2344533 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR61_RS10360 (WIR61_10360) | - | 2344538..2344981 (-) | 444 | WP_159376150.1 | DUF6838 family protein | - |
| WIR61_RS10365 (WIR61_10365) | - | 2345230..2345670 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR61_RS10370 (WIR61_10370) | - | 2345774..2345971 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR61_RS10375 (WIR61_10375) | - | 2346140..2346460 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR61_RS10380 (WIR61_10380) | - | 2346542..2347048 (+) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIR61_RS10385 (WIR61_10385) | - | 2347749..2348504 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR61_RS10390 (WIR61_10390) | - | 2348647..2349075 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR61_RS10395 (WIR61_10395) | - | 2349496..2349696 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR61_RS10400 (WIR61_10400) | - | 2349879..2351033 (-) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| WIR61_RS10405 (WIR61_10405) | - | 2351284..2352105 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIR61_RS10410 (WIR61_10410) | - | 2352181..2353569 (-) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| WIR61_RS10415 (WIR61_10415) | - | 2353704..2354462 (-) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR61_RS10420 (WIR61_10420) | - | 2354464..2355180 (-) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR61_RS10425 (WIR61_10425) | - | 2355182..2355889 (-) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR61_RS10430 (WIR61_10430) | - | 2356005..2356541 (-) | 537 | WP_075052540.1 | hypothetical protein | - |
| WIR61_RS10435 (WIR61_10435) | - | 2356643..2357713 (-) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR61_RS10440 (WIR61_10440) | - | 2357706..2358764 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR61_RS10445 (WIR61_10445) | - | 2358751..2359083 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR61_RS10450 (WIR61_10450) | - | 2359282..2360403 (+) | 1122 | WP_003428201.1 | glycosyltransferase | - |
| WIR61_RS10455 (WIR61_10455) | - | 2360531..2362429 (-) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| WIR61_RS10460 (WIR61_10460) | - | 2362744..2363520 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR61_RS10465 (WIR61_10465) | - | 2363612..2364364 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR61_RS10470 (WIR61_10470) | galT | 2364525..2365475 (-) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR61_RS10475 (WIR61_10475) | - | 2365860..2367056 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR61_RS10480 (WIR61_10480) | - | 2367391..2367843 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR61_RS10485 (WIR61_10485) | purB | 2368154..2369599 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIR61_RS10490 (WIR61_10490) | - | 2369743..2370651 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR61_RS10495 (WIR61_10495) | - | 2370908..2371732 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR61_RS10500 (WIR61_10500) | lepB | 2371772..2372302 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIR61_RS10505 (WIR61_10505) | - | 2372384..2374165 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR61_RS10510 (WIR61_10510) | - | 2374547..2376883 (-) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIR61_RS10515 (WIR61_10515) | rny | 2377197..2378738 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR61_RS10520 (WIR61_10520) | recA | 2378914..2379960 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR61_RS10525 (WIR61_10525) | pgsA | 2380248..2380790 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR61_RS10530 (WIR61_10530) | rimO | 2380777..2382111 (-) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR61_RS10535 (WIR61_10535) | mnmH | 2382105..2383163 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR61_RS10540 (WIR61_10540) | - | 2383166..2385577 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR61_RS10545 (WIR61_10545) | - | 2385700..2386329 (-) | 630 | WP_021363436.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR61_RS10550 (WIR61_10550) | tnpB | 2386516..2387634 (-) | 1119 | WP_339072209.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR61_RS10555 (WIR61_10555) | dapG | 2388423..2389646 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR61_RS10560 (WIR61_10560) | - | 2389656..2389901 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR61_RS10565 (WIR61_10565) | - | 2389936..2391183 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR61_RS10570 (WIR61_10570) | - | 2391341..2392084 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR61_RS10575 (WIR61_10575) | pnp | 2392350..2394461 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR61_RS10580 (WIR61_10580) | - | 2394586..2395431 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR61_RS10585 (WIR61_10585) | rpsO | 2395671..2395928 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR61_RS10590 (WIR61_10590) | - | 2396032..2396961 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR61_RS10595 (WIR61_10595) | truB | 2397092..2397997 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR61_RS10600 (WIR61_10600) | - | 2398010..2398315 (-) | 306 | Protein_2112 | DHHA1 domain-containing protein | - |
| WIR61_RS10605 (WIR61_10605) | tnpB | 2398433..2399551 (-) | 1119 | WP_339072203.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR61_RS10610 (WIR61_10610) | - | 2400200..2400877 (-) | 678 | Protein_2114 | DHH family phosphoesterase | - |
| WIR61_RS10615 (WIR61_10615) | rbfA | 2400858..2401238 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR61_RS10620 (WIR61_10620) | infB | 2401281..2403221 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIR61_RS10625 (WIR61_10625) | - | 2403243..2403554 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR61_RS10630 (WIR61_10630) | - | 2403544..2403825 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR61_RS10635 (WIR61_10635) | nusA | 2403832..2404986 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR61_RS10640 (WIR61_10640) | rimP | 2405016..2405477 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR61_RS10645 (WIR61_10645) | - | 2405681..2409979 (-) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIR61_RS10650 (WIR61_10650) | acd | 2410194..2412017 (-) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960846 WIR61_RS10520 WP_003428218.1 2378914..2379960(-) (recA) [Clostridioides difficile strain Z1322PCD0024]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960846 WIR61_RS10520 WP_003428218.1 2378914..2379960(-) (recA) [Clostridioides difficile strain Z1322PCD0024]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.