Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR97_RS06460 | Genome accession | NZ_CP149701 |
| Coordinates | 1369698..1370744 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0027 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1337566..1418552 | 1369698..1370744 | within | 0 |
Gene organization within MGE regions
Location: 1337566..1418552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR97_RS06330 (WIR97_06330) | acd | 1337641..1339464 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIR97_RS06335 (WIR97_06335) | - | 1339679..1343977 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIR97_RS06340 (WIR97_06340) | rimP | 1344181..1344642 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR97_RS06345 (WIR97_06345) | nusA | 1344672..1345826 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR97_RS06350 (WIR97_06350) | - | 1345833..1346114 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR97_RS06355 (WIR97_06355) | - | 1346104..1346415 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR97_RS06360 (WIR97_06360) | infB | 1346437..1348377 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIR97_RS06365 (WIR97_06365) | rbfA | 1348420..1348800 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR97_RS06370 (WIR97_06370) | - | 1348781..1349458 (+) | 678 | Protein_1160 | DHH family phosphoesterase | - |
| WIR97_RS06375 (WIR97_06375) | tnpB | 1350107..1351225 (+) | 1119 | WP_339072203.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR97_RS06380 (WIR97_06380) | - | 1351343..1351648 (+) | 306 | Protein_1162 | DHHA1 domain-containing protein | - |
| WIR97_RS06385 (WIR97_06385) | truB | 1351661..1352566 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR97_RS06390 (WIR97_06390) | - | 1352697..1353626 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR97_RS06395 (WIR97_06395) | rpsO | 1353730..1353987 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR97_RS06400 (WIR97_06400) | - | 1354227..1355072 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR97_RS06405 (WIR97_06405) | pnp | 1355197..1357308 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR97_RS06410 (WIR97_06410) | - | 1357574..1358317 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR97_RS06415 (WIR97_06415) | - | 1358475..1359722 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR97_RS06420 (WIR97_06420) | - | 1359757..1360002 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR97_RS06425 (WIR97_06425) | dapG | 1360012..1361235 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR97_RS06430 (WIR97_06430) | tnpB | 1362024..1363142 (+) | 1119 | WP_339072209.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR97_RS06435 (WIR97_06435) | - | 1363329..1363958 (+) | 630 | WP_021363436.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR97_RS06440 (WIR97_06440) | - | 1364081..1366492 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR97_RS06445 (WIR97_06445) | mnmH | 1366495..1367553 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR97_RS06450 (WIR97_06450) | rimO | 1367547..1368881 (+) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR97_RS06455 (WIR97_06455) | pgsA | 1368868..1369410 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR97_RS06460 (WIR97_06460) | recA | 1369698..1370744 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR97_RS06465 (WIR97_06465) | rny | 1370920..1372461 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR97_RS06470 (WIR97_06470) | - | 1372775..1375111 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIR97_RS06475 (WIR97_06475) | - | 1375493..1377274 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR97_RS06480 (WIR97_06480) | lepB | 1377356..1377886 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIR97_RS06485 (WIR97_06485) | - | 1377926..1378750 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR97_RS06490 (WIR97_06490) | - | 1379007..1379915 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR97_RS06495 (WIR97_06495) | purB | 1380059..1381504 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIR97_RS06500 (WIR97_06500) | - | 1381815..1382267 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR97_RS06505 (WIR97_06505) | - | 1382602..1383798 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR97_RS06510 (WIR97_06510) | galT | 1384183..1385133 (+) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR97_RS06515 (WIR97_06515) | - | 1385294..1386046 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR97_RS06520 (WIR97_06520) | - | 1386138..1386914 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR97_RS06525 (WIR97_06525) | - | 1387229..1389127 (+) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| WIR97_RS06530 (WIR97_06530) | - | 1389255..1390376 (-) | 1122 | WP_003428201.1 | glycosyltransferase | - |
| WIR97_RS06535 (WIR97_06535) | - | 1390575..1390907 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR97_RS06540 (WIR97_06540) | - | 1390894..1391952 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR97_RS06545 (WIR97_06545) | - | 1391945..1393015 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR97_RS06550 (WIR97_06550) | - | 1393117..1393653 (+) | 537 | WP_075052540.1 | hypothetical protein | - |
| WIR97_RS06555 (WIR97_06555) | - | 1393769..1394476 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR97_RS06560 (WIR97_06560) | - | 1394478..1395194 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR97_RS06565 (WIR97_06565) | - | 1395196..1395954 (+) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR97_RS06570 (WIR97_06570) | - | 1396089..1397477 (+) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| WIR97_RS06575 (WIR97_06575) | - | 1397553..1398374 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIR97_RS06580 (WIR97_06580) | - | 1398625..1399779 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| WIR97_RS06585 (WIR97_06585) | - | 1399962..1400162 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR97_RS06590 (WIR97_06590) | - | 1400583..1401011 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR97_RS06595 (WIR97_06595) | - | 1401154..1401909 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR97_RS06600 (WIR97_06600) | - | 1402610..1403116 (-) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIR97_RS06605 (WIR97_06605) | - | 1403198..1403518 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR97_RS06610 (WIR97_06610) | - | 1403687..1403884 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR97_RS06615 (WIR97_06615) | - | 1403988..1404428 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR97_RS06620 (WIR97_06620) | - | 1404677..1405120 (+) | 444 | WP_159376150.1 | DUF6838 family protein | - |
| WIR97_RS06625 (WIR97_06625) | - | 1405125..1406189 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR97_RS06630 (WIR97_06630) | - | 1406203..1406631 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIR97_RS06635 (WIR97_06635) | - | 1406757..1407203 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIR97_RS06640 (WIR97_06640) | - | 1407397..1409850 (+) | 2454 | WP_159376151.1 | hypothetical protein | - |
| WIR97_RS06645 (WIR97_06645) | - | 1409850..1410272 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIR97_RS06650 (WIR97_06650) | - | 1410554..1412083 (+) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| WIR97_RS06655 (WIR97_06655) | - | 1412099..1412425 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIR97_RS06660 (WIR97_06660) | - | 1412425..1412853 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIR97_RS06665 (WIR97_06665) | - | 1412846..1413898 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIR97_RS06670 (WIR97_06670) | - | 1413895..1414593 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIR97_RS06675 (WIR97_06675) | - | 1414594..1415577 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960813 WIR97_RS06460 WP_003428218.1 1369698..1370744(+) (recA) [Clostridioides difficile strain Z1322PCD0027]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960813 WIR97_RS06460 WP_003428218.1 1369698..1370744(+) (recA) [Clostridioides difficile strain Z1322PCD0027]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.