Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR68_RS06965 | Genome accession | NZ_CP149698 |
| Coordinates | 1445410..1446456 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain Z1322PCD0028 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1420028..1484196 | 1445410..1446456 | within | 0 |
Gene organization within MGE regions
Location: 1420028..1484196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR68_RS06850 (WIR68_06850) | rimP | 1422444..1422905 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR68_RS06855 (WIR68_06855) | nusA | 1422935..1424089 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR68_RS06860 (WIR68_06860) | - | 1424096..1424377 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR68_RS06865 (WIR68_06865) | - | 1424367..1424678 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR68_RS06870 (WIR68_06870) | infB | 1424700..1426640 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIR68_RS06875 (WIR68_06875) | rbfA | 1426683..1427063 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR68_RS06880 (WIR68_06880) | - | 1427044..1427721 (+) | 678 | Protein_1263 | DHH family phosphoesterase | - |
| WIR68_RS06885 (WIR68_06885) | tnpB | 1428361..1429479 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR68_RS06890 (WIR68_06890) | - | 1429597..1429902 (+) | 306 | Protein_1265 | DHHA1 domain-containing protein | - |
| WIR68_RS06895 (WIR68_06895) | truB | 1429915..1430820 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR68_RS06900 (WIR68_06900) | - | 1430951..1431880 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR68_RS06905 (WIR68_06905) | rpsO | 1431984..1432241 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR68_RS06910 (WIR68_06910) | - | 1432481..1433326 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR68_RS06915 (WIR68_06915) | pnp | 1433451..1435562 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR68_RS06920 (WIR68_06920) | - | 1435828..1436571 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR68_RS06925 (WIR68_06925) | - | 1436729..1437976 (+) | 1248 | WP_009902409.1 | pitrilysin family protein | - |
| WIR68_RS06930 (WIR68_06930) | - | 1438011..1438256 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| WIR68_RS06935 (WIR68_06935) | dapG | 1438266..1439489 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR68_RS06940 (WIR68_06940) | - | 1439602..1440336 (+) | 735 | WP_021364422.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR68_RS06945 (WIR68_06945) | - | 1440459..1442870 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR68_RS06950 (WIR68_06950) | mnmH | 1442873..1443931 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR68_RS06955 (WIR68_06955) | - | 1443925..1444593 (+) | 669 | WP_021402035.1 | TRAM domain-containing protein | - |
| WIR68_RS06960 (WIR68_06960) | pgsA | 1444580..1445122 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR68_RS06965 (WIR68_06965) | recA | 1445410..1446456 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| WIR68_RS06970 (WIR68_06970) | rny | 1446632..1448173 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR68_RS06975 (WIR68_06975) | - | 1448808..1450589 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR68_RS06980 (WIR68_06980) | lepB | 1450671..1451201 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIR68_RS06985 (WIR68_06985) | - | 1451241..1452065 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR68_RS06990 (WIR68_06990) | - | 1452322..1453230 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR68_RS06995 (WIR68_06995) | purB | 1453374..1454819 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIR68_RS07000 (WIR68_07000) | - | 1455130..1455582 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR68_RS07005 (WIR68_07005) | - | 1455994..1457571 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| WIR68_RS07010 (WIR68_07010) | - | 1457719..1458471 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| WIR68_RS07015 (WIR68_07015) | - | 1458604..1459950 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| WIR68_RS07020 (WIR68_07020) | - | 1460062..1461258 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR68_RS07025 (WIR68_07025) | galT | 1461643..1462593 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR68_RS07030 (WIR68_07030) | - | 1462754..1463506 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR68_RS07035 (WIR68_07035) | - | 1463598..1464374 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR68_RS07040 (WIR68_07040) | - | 1464689..1466587 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR68_RS07045 (WIR68_07045) | - | 1466715..1467836 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR68_RS07050 (WIR68_07050) | - | 1468035..1468367 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR68_RS07055 (WIR68_07055) | - | 1468354..1469412 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| WIR68_RS07060 (WIR68_07060) | - | 1469405..1470475 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR68_RS07065 (WIR68_07065) | - | 1470577..1471113 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR68_RS07070 (WIR68_07070) | - | 1471229..1471936 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR68_RS07075 (WIR68_07075) | - | 1471938..1472654 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR68_RS07080 (WIR68_07080) | - | 1472656..1473414 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR68_RS07085 (WIR68_07085) | - | 1473549..1474937 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| WIR68_RS07090 (WIR68_07090) | - | 1475013..1475834 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| WIR68_RS07095 (WIR68_07095) | - | 1476085..1477239 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR68_RS07100 (WIR68_07100) | - | 1477422..1477622 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR68_RS07105 (WIR68_07105) | - | 1478043..1478471 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR68_RS07110 (WIR68_07110) | - | 1478614..1479369 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR68_RS07115 (WIR68_07115) | - | 1480070..1480576 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR68_RS07120 (WIR68_07120) | - | 1480658..1480978 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR68_RS07125 (WIR68_07125) | - | 1481147..1481344 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR68_RS07130 (WIR68_07130) | - | 1481449..1481889 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR68_RS07135 (WIR68_07135) | - | 1482138..1482581 (+) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIR68_RS07140 (WIR68_07140) | - | 1482586..1483650 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR68_RS07145 (WIR68_07145) | - | 1483664..1484092 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=960796 WIR68_RS06965 WP_021364420.1 1445410..1446456(+) (recA) [Clostridioides difficile strain Z1322PCD0028]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960796 WIR68_RS06965 WP_021364420.1 1445410..1446456(+) (recA) [Clostridioides difficile strain Z1322PCD0028]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.