Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR69_RS05770 | Genome accession | NZ_CP149693 |
| Coordinates | 1274206..1275252 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0033 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1248151..1308856 | 1274206..1275252 | within | 0 |
Gene organization within MGE regions
Location: 1248151..1308856
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR69_RS05655 (WIR69_05655) | rimP | 1250567..1251028 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR69_RS05660 (WIR69_05660) | nusA | 1251058..1252212 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR69_RS05665 (WIR69_05665) | - | 1252219..1252500 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR69_RS05670 (WIR69_05670) | - | 1252490..1252801 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR69_RS05675 (WIR69_05675) | infB | 1252823..1254763 (+) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIR69_RS05680 (WIR69_05680) | rbfA | 1254806..1255186 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR69_RS05685 (WIR69_05685) | - | 1255167..1255844 (+) | 678 | Protein_1108 | DHH family phosphoesterase | - |
| WIR69_RS05690 (WIR69_05690) | tnpB | 1256493..1257611 (+) | 1119 | WP_077723362.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR69_RS05695 (WIR69_05695) | - | 1257729..1258034 (+) | 306 | Protein_1110 | DHHA1 domain-containing protein | - |
| WIR69_RS05700 (WIR69_05700) | truB | 1258047..1258952 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR69_RS05705 (WIR69_05705) | - | 1259083..1260012 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR69_RS05710 (WIR69_05710) | rpsO | 1260116..1260373 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR69_RS05715 (WIR69_05715) | - | 1260613..1261458 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR69_RS05720 (WIR69_05720) | pnp | 1261583..1263694 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR69_RS05725 (WIR69_05725) | - | 1263960..1264703 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR69_RS05730 (WIR69_05730) | - | 1264861..1266108 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR69_RS05735 (WIR69_05735) | - | 1266143..1266388 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR69_RS05740 (WIR69_05740) | dapG | 1266398..1267621 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR69_RS05745 (WIR69_05745) | - | 1267734..1268467 (+) | 734 | Protein_1120 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR69_RS05750 (WIR69_05750) | - | 1268565..1271000 (+) | 2436 | WP_052447067.1 | DNA translocase FtsK | - |
| WIR69_RS05755 (WIR69_05755) | mnmH | 1271003..1272061 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR69_RS05760 (WIR69_05760) | rimO | 1272055..1273389 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR69_RS05765 (WIR69_05765) | pgsA | 1273376..1273918 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR69_RS05770 (WIR69_05770) | recA | 1274206..1275252 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR69_RS05775 (WIR69_05775) | rny | 1275428..1276969 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR69_RS05780 (WIR69_05780) | - | 1277604..1279385 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR69_RS05785 (WIR69_05785) | lepB | 1279467..1279997 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIR69_RS05790 (WIR69_05790) | - | 1280037..1280861 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR69_RS05795 (WIR69_05795) | - | 1281118..1282026 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR69_RS05800 (WIR69_05800) | purB | 1282170..1283615 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIR69_RS05805 (WIR69_05805) | - | 1283927..1284379 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR69_RS05810 (WIR69_05810) | - | 1284714..1285910 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR69_RS05815 (WIR69_05815) | galT | 1286295..1287245 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR69_RS05820 (WIR69_05820) | - | 1287406..1288157 (+) | 752 | Protein_1135 | exodeoxyribonuclease III | - |
| WIR69_RS05825 (WIR69_05825) | - | 1288249..1289025 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR69_RS05830 (WIR69_05830) | - | 1289340..1291238 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR69_RS05835 (WIR69_05835) | - | 1291366..1292487 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR69_RS05840 (WIR69_05840) | - | 1292686..1293018 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR69_RS05845 (WIR69_05845) | - | 1293005..1294063 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR69_RS05850 (WIR69_05850) | - | 1294056..1295126 (+) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR69_RS05855 (WIR69_05855) | - | 1295228..1295764 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR69_RS05860 (WIR69_05860) | - | 1295880..1296587 (+) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR69_RS05865 (WIR69_05865) | - | 1296589..1297305 (+) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR69_RS05870 (WIR69_05870) | - | 1297307..1298065 (+) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR69_RS05875 (WIR69_05875) | - | 1298200..1299588 (+) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIR69_RS05880 (WIR69_05880) | - | 1299663..1300469 (-) | 807 | Protein_1147 | pyridoxamine kinase | - |
| WIR69_RS05885 (WIR69_05885) | - | 1300734..1301888 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR69_RS05890 (WIR69_05890) | - | 1302071..1302271 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR69_RS05895 (WIR69_05895) | - | 1302692..1303120 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR69_RS05900 (WIR69_05900) | - | 1303263..1304018 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR69_RS05905 (WIR69_05905) | - | 1304719..1305225 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR69_RS05910 (WIR69_05910) | - | 1305307..1305627 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR69_RS05915 (WIR69_05915) | - | 1305796..1305993 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR69_RS05920 (WIR69_05920) | - | 1306097..1306537 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR69_RS05925 (WIR69_05925) | - | 1306786..1307229 (+) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIR69_RS05930 (WIR69_05930) | - | 1307234..1308298 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR69_RS05935 (WIR69_05935) | - | 1308312..1308740 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960758 WIR69_RS05770 WP_003428218.1 1274206..1275252(+) (recA) [Clostridioides difficile strain Z1322PCD0033]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960758 WIR69_RS05770 WP_003428218.1 1274206..1275252(+) (recA) [Clostridioides difficile strain Z1322PCD0033]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.