Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR79_RS06645 | Genome accession | NZ_CP149678 |
| Coordinates | 1415837..1416883 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0055 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1389780..1450502 | 1415837..1416883 | within | 0 |
Gene organization within MGE regions
Location: 1389780..1450502
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR79_RS06530 (WIR79_06530) | rimP | 1392196..1392657 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR79_RS06535 (WIR79_06535) | nusA | 1392687..1393841 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR79_RS06540 (WIR79_06540) | - | 1393848..1394129 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR79_RS06545 (WIR79_06545) | - | 1394119..1394430 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR79_RS06550 (WIR79_06550) | infB | 1394452..1396392 (+) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIR79_RS06555 (WIR79_06555) | rbfA | 1396435..1396815 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR79_RS06560 (WIR79_06560) | - | 1396796..1397473 (+) | 678 | Protein_1199 | DHH family phosphoesterase | - |
| WIR79_RS06565 (WIR79_06565) | tnpB | 1398122..1399240 (+) | 1119 | WP_077715958.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR79_RS06570 (WIR79_06570) | - | 1399358..1399663 (+) | 306 | Protein_1201 | DHHA1 domain-containing protein | - |
| WIR79_RS06575 (WIR79_06575) | truB | 1399676..1400581 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR79_RS06580 (WIR79_06580) | - | 1400712..1401641 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR79_RS06585 (WIR79_06585) | rpsO | 1401745..1402002 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR79_RS06590 (WIR79_06590) | - | 1402242..1403087 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR79_RS06595 (WIR79_06595) | pnp | 1403212..1405323 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR79_RS06600 (WIR79_06600) | - | 1405589..1406332 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR79_RS06605 (WIR79_06605) | - | 1406490..1407737 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR79_RS06610 (WIR79_06610) | - | 1407772..1408017 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR79_RS06615 (WIR79_06615) | dapG | 1408027..1409250 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR79_RS06620 (WIR79_06620) | - | 1409363..1410097 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR79_RS06625 (WIR79_06625) | - | 1410220..1412631 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR79_RS06630 (WIR79_06630) | mnmH | 1412634..1413692 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR79_RS06635 (WIR79_06635) | rimO | 1413686..1415020 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR79_RS06640 (WIR79_06640) | pgsA | 1415007..1415549 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR79_RS06645 (WIR79_06645) | recA | 1415837..1416883 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR79_RS06650 (WIR79_06650) | rny | 1417059..1418600 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR79_RS06655 (WIR79_06655) | - | 1419235..1421016 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR79_RS06660 (WIR79_06660) | lepB | 1421098..1421628 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIR79_RS06665 (WIR79_06665) | - | 1421668..1422492 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR79_RS06670 (WIR79_06670) | - | 1422749..1423657 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR79_RS06675 (WIR79_06675) | purB | 1423801..1425246 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIR79_RS06680 (WIR79_06680) | - | 1425558..1426010 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR79_RS06685 (WIR79_06685) | - | 1426345..1427541 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR79_RS06690 (WIR79_06690) | galT | 1427926..1428876 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR79_RS06695 (WIR79_06695) | - | 1429037..1429789 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR79_RS06700 (WIR79_06700) | - | 1429881..1430657 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR79_RS06705 (WIR79_06705) | - | 1430972..1432870 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR79_RS06710 (WIR79_06710) | - | 1432998..1434119 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR79_RS06715 (WIR79_06715) | - | 1434318..1434650 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR79_RS06720 (WIR79_06720) | - | 1434637..1435695 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR79_RS06725 (WIR79_06725) | - | 1435688..1436758 (+) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR79_RS06730 (WIR79_06730) | - | 1436860..1437396 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR79_RS06735 (WIR79_06735) | - | 1437512..1438219 (+) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR79_RS06740 (WIR79_06740) | - | 1438221..1438937 (+) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR79_RS06745 (WIR79_06745) | - | 1438939..1439697 (+) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR79_RS06750 (WIR79_06750) | - | 1439832..1441220 (+) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIR79_RS06755 (WIR79_06755) | - | 1441296..1442117 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIR79_RS06760 (WIR79_06760) | - | 1442368..1443522 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR79_RS06765 (WIR79_06765) | - | 1443705..1443905 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR79_RS06770 (WIR79_06770) | - | 1444326..1444754 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR79_RS06775 (WIR79_06775) | - | 1444897..1445652 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR79_RS06780 (WIR79_06780) | - | 1446038..1446163 (+) | 126 | WP_265113142.1 | hypothetical protein | - |
| WIR79_RS06785 (WIR79_06785) | - | 1446353..1446859 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR79_RS06790 (WIR79_06790) | - | 1446941..1447261 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR79_RS06795 (WIR79_06795) | - | 1447430..1447627 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR79_RS06800 (WIR79_06800) | - | 1447731..1448171 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR79_RS06805 (WIR79_06805) | - | 1448420..1448863 (+) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIR79_RS06810 (WIR79_06810) | - | 1448868..1449932 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR79_RS06815 (WIR79_06815) | - | 1449946..1450374 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960684 WIR79_RS06645 WP_003428218.1 1415837..1416883(+) (recA) [Clostridioides difficile strain Z1322PCD0055]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960684 WIR79_RS06645 WP_003428218.1 1415837..1416883(+) (recA) [Clostridioides difficile strain Z1322PCD0055]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.