Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS29_RS12080 | Genome accession | NZ_CP149673 |
| Coordinates | 2696064..2697110 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0060 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2648270..2725482 | 2696064..2697110 | within | 0 |
Gene organization within MGE regions
Location: 2648270..2725482
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS29_RS11860 (WIS29_11850) | - | 2651242..2652225 (-) | 984 | WP_003438452.1 | phage tail protein | - |
| WIS29_RS11865 (WIS29_11855) | - | 2652226..2652924 (-) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIS29_RS11870 (WIS29_11860) | - | 2652921..2653973 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS29_RS11875 (WIS29_11865) | - | 2653966..2654394 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS29_RS11880 (WIS29_11870) | - | 2654394..2654720 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS29_RS11885 (WIS29_11875) | - | 2654736..2656265 (-) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIS29_RS11890 (WIS29_11880) | - | 2656547..2656969 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS29_RS11895 (WIS29_11885) | - | 2656969..2659422 (-) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIS29_RS11900 (WIS29_11890) | - | 2659422..2659589 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS29_RS11905 (WIS29_11895) | - | 2659616..2660062 (-) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS29_RS11910 (WIS29_11900) | - | 2660176..2660604 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS29_RS11915 (WIS29_11905) | - | 2660618..2661682 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS29_RS11920 (WIS29_11910) | - | 2661687..2662130 (-) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIS29_RS11925 (WIS29_11915) | - | 2662379..2662819 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS29_RS11930 (WIS29_11920) | - | 2662924..2663121 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS29_RS11935 (WIS29_11925) | - | 2663290..2663610 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS29_RS11940 (WIS29_11930) | - | 2663692..2664198 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS29_RS11945 (WIS29_11935) | - | 2664899..2665654 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS29_RS11950 (WIS29_11940) | - | 2665797..2666225 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS29_RS11955 (WIS29_11945) | - | 2666646..2666846 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS29_RS11960 (WIS29_11950) | - | 2667029..2668183 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS29_RS11965 (WIS29_11955) | - | 2668434..2669255 (+) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIS29_RS11970 (WIS29_11960) | - | 2669331..2670719 (-) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIS29_RS11975 (WIS29_11965) | - | 2670854..2671612 (-) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS29_RS11980 (WIS29_11970) | - | 2671614..2672330 (-) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS29_RS11985 (WIS29_11975) | - | 2672332..2673039 (-) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS29_RS11990 (WIS29_11980) | - | 2673155..2673691 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS29_RS11995 (WIS29_11985) | - | 2673793..2674863 (-) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS29_RS12000 (WIS29_11990) | - | 2674856..2675914 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS29_RS12005 (WIS29_11995) | - | 2675901..2676233 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS29_RS12010 (WIS29_12000) | - | 2676432..2677553 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS29_RS12015 (WIS29_12005) | - | 2677681..2679579 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS29_RS12020 (WIS29_12010) | - | 2679894..2680670 (+) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIS29_RS12025 (WIS29_12015) | - | 2680762..2681514 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS29_RS12030 (WIS29_12020) | galT | 2681675..2682625 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS29_RS12035 (WIS29_12025) | - | 2683010..2684206 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS29_RS12040 (WIS29_12030) | - | 2684541..2684993 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS29_RS12045 (WIS29_12035) | purB | 2685304..2686749 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS29_RS12050 (WIS29_12040) | - | 2686893..2687801 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS29_RS12055 (WIS29_12045) | - | 2688058..2688882 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS29_RS12060 (WIS29_12050) | lepB | 2688922..2689452 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS29_RS12065 (WIS29_12055) | - | 2689534..2691315 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS29_RS12070 (WIS29_12060) | - | 2691697..2694033 (-) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS29_RS12075 (WIS29_12065) | rny | 2694347..2695888 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS29_RS12080 (WIS29_12070) | recA | 2696064..2697110 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS29_RS12085 (WIS29_12075) | pgsA | 2697398..2697940 (-) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS29_RS12090 (WIS29_12080) | rimO | 2697927..2699261 (-) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS29_RS12095 (WIS29_12085) | mnmH | 2699255..2700313 (-) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS29_RS12100 (WIS29_12090) | - | 2700316..2702727 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS29_RS12105 (WIS29_12095) | - | 2702850..2703584 (-) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS29_RS12110 (WIS29_12100) | dapG | 2703697..2704920 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS29_RS12115 (WIS29_12105) | - | 2704930..2705175 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS29_RS12120 (WIS29_12110) | - | 2705210..2706457 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS29_RS12125 (WIS29_12115) | - | 2706615..2707358 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS29_RS12130 (WIS29_12120) | pnp | 2707624..2709735 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS29_RS12135 (WIS29_12125) | - | 2709860..2710705 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS29_RS12140 (WIS29_12130) | rpsO | 2710945..2711202 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS29_RS12145 (WIS29_12135) | - | 2711306..2712235 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS29_RS12150 (WIS29_12140) | truB | 2712366..2713271 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS29_RS12155 (WIS29_12145) | - | 2713284..2714267 (-) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIS29_RS12160 (WIS29_12150) | rbfA | 2714248..2714628 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS29_RS12165 (WIS29_12155) | infB | 2714671..2716611 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS29_RS12170 (WIS29_12160) | - | 2716633..2716944 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS29_RS12175 (WIS29_12165) | - | 2716934..2717215 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS29_RS12180 (WIS29_12170) | nusA | 2717222..2718376 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS29_RS12185 (WIS29_12175) | rimP | 2718406..2718867 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS29_RS12190 (WIS29_12180) | - | 2719071..2723369 (-) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS29_RS12195 (WIS29_12185) | acd | 2723584..2725407 (-) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960670 WIS29_RS12080 WP_003428218.1 2696064..2697110(-) (recA) [Clostridioides difficile strain Z1322PCD0060]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960670 WIS29_RS12080 WP_003428218.1 2696064..2697110(-) (recA) [Clostridioides difficile strain Z1322PCD0060]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.