Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS17_RS05520 | Genome accession | NZ_CP149666 |
| Coordinates | 1255003..1256049 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322PCD0067 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1226631..1303843 | 1255003..1256049 | within | 0 |
Gene organization within MGE regions
Location: 1226631..1303843
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS17_RS05405 (WIS17_05405) | acd | 1226706..1228529 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIS17_RS05410 (WIS17_05410) | - | 1228744..1233042 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS17_RS05415 (WIS17_05415) | rimP | 1233246..1233707 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS17_RS05420 (WIS17_05420) | nusA | 1233737..1234891 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS17_RS05425 (WIS17_05425) | - | 1234898..1235179 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS17_RS05430 (WIS17_05430) | - | 1235169..1235480 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS17_RS05435 (WIS17_05435) | infB | 1235502..1237442 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS17_RS05440 (WIS17_05440) | rbfA | 1237485..1237865 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS17_RS05445 (WIS17_05445) | - | 1237846..1238829 (+) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIS17_RS05450 (WIS17_05450) | truB | 1238842..1239747 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS17_RS05455 (WIS17_05455) | - | 1239878..1240807 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS17_RS05460 (WIS17_05460) | rpsO | 1240911..1241168 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS17_RS05465 (WIS17_05465) | - | 1241408..1242253 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS17_RS05470 (WIS17_05470) | pnp | 1242378..1244489 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS17_RS05475 (WIS17_05475) | - | 1244755..1245498 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS17_RS05480 (WIS17_05480) | - | 1245656..1246903 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS17_RS05485 (WIS17_05485) | - | 1246938..1247183 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS17_RS05490 (WIS17_05490) | dapG | 1247193..1248416 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS17_RS05495 (WIS17_05495) | - | 1248529..1249263 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS17_RS05500 (WIS17_05500) | - | 1249386..1251797 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS17_RS05505 (WIS17_05505) | mnmH | 1251800..1252858 (+) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS17_RS05510 (WIS17_05510) | rimO | 1252852..1254186 (+) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS17_RS05515 (WIS17_05515) | pgsA | 1254173..1254715 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS17_RS05520 (WIS17_05520) | recA | 1255003..1256049 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS17_RS05525 (WIS17_05525) | rny | 1256225..1257766 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS17_RS05530 (WIS17_05530) | - | 1258080..1260416 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS17_RS05535 (WIS17_05535) | - | 1260798..1262579 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS17_RS05540 (WIS17_05540) | lepB | 1262661..1263191 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS17_RS05545 (WIS17_05545) | - | 1263231..1264055 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS17_RS05550 (WIS17_05550) | - | 1264312..1265220 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS17_RS05555 (WIS17_05555) | purB | 1265364..1266809 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS17_RS05560 (WIS17_05560) | - | 1267120..1267572 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS17_RS05565 (WIS17_05565) | - | 1267907..1269103 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS17_RS05570 (WIS17_05570) | galT | 1269488..1270438 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS17_RS05575 (WIS17_05575) | - | 1270599..1271351 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS17_RS05580 (WIS17_05580) | - | 1271443..1272219 (-) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIS17_RS05585 (WIS17_05585) | - | 1272534..1274432 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS17_RS05590 (WIS17_05590) | - | 1274560..1275681 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS17_RS05595 (WIS17_05595) | - | 1275880..1276212 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS17_RS05600 (WIS17_05600) | - | 1276199..1277257 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS17_RS05605 (WIS17_05605) | - | 1277250..1278320 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS17_RS05610 (WIS17_05610) | - | 1278422..1278958 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS17_RS05615 (WIS17_05615) | - | 1279074..1279781 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS17_RS05620 (WIS17_05620) | - | 1279783..1280499 (+) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS17_RS05625 (WIS17_05625) | - | 1280501..1281259 (+) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS17_RS05630 (WIS17_05630) | - | 1281394..1282782 (+) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIS17_RS05635 (WIS17_05635) | - | 1282858..1283679 (-) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIS17_RS05640 (WIS17_05640) | - | 1283930..1285084 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS17_RS05645 (WIS17_05645) | - | 1285267..1285467 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS17_RS05650 (WIS17_05650) | - | 1285888..1286316 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS17_RS05655 (WIS17_05655) | - | 1286459..1287214 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS17_RS05660 (WIS17_05660) | - | 1287915..1288421 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS17_RS05665 (WIS17_05665) | - | 1288503..1288823 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS17_RS05670 (WIS17_05670) | - | 1288992..1289189 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS17_RS05675 (WIS17_05675) | - | 1289294..1289734 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS17_RS05680 (WIS17_05680) | - | 1289983..1290426 (+) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIS17_RS05685 (WIS17_05685) | - | 1290431..1291495 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS17_RS05690 (WIS17_05690) | - | 1291509..1291937 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS17_RS05695 (WIS17_05695) | - | 1292051..1292497 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS17_RS05700 (WIS17_05700) | - | 1292524..1292691 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS17_RS05705 (WIS17_05705) | - | 1292691..1295144 (+) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIS17_RS05710 (WIS17_05710) | - | 1295144..1295566 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS17_RS05715 (WIS17_05715) | - | 1295848..1297377 (+) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIS17_RS05720 (WIS17_05720) | - | 1297393..1297719 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS17_RS05725 (WIS17_05725) | - | 1297719..1298147 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS17_RS05730 (WIS17_05730) | - | 1298140..1299192 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS17_RS05735 (WIS17_05735) | - | 1299189..1299887 (+) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIS17_RS05740 (WIS17_05740) | - | 1299888..1300871 (+) | 984 | WP_003438452.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960619 WIS17_RS05520 WP_003428218.1 1255003..1256049(+) (recA) [Clostridioides difficile strain Z1322PCD0067]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960619 WIS17_RS05520 WP_003428218.1 1255003..1256049(+) (recA) [Clostridioides difficile strain Z1322PCD0067]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.