Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR95_RS05555 | Genome accession | NZ_CP149658 |
| Coordinates | 1258059..1259105 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1323HCD0021 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1232002..1292724 | 1258059..1259105 | within | 0 |
Gene organization within MGE regions
Location: 1232002..1292724
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR95_RS05440 (WIR95_05440) | rimP | 1234418..1234879 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR95_RS05445 (WIR95_05445) | nusA | 1234909..1236063 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR95_RS05450 (WIR95_05450) | - | 1236070..1236351 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR95_RS05455 (WIR95_05455) | - | 1236341..1236652 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR95_RS05460 (WIR95_05460) | infB | 1236674..1238614 (+) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIR95_RS05465 (WIR95_05465) | rbfA | 1238657..1239037 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR95_RS05470 (WIR95_05470) | - | 1239018..1239695 (+) | 678 | Protein_1081 | DHH family phosphoesterase | - |
| WIR95_RS05475 (WIR95_05475) | tnpB | 1240344..1241462 (+) | 1119 | WP_077723362.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIR95_RS05480 (WIR95_05480) | - | 1241580..1241885 (+) | 306 | Protein_1083 | DHHA1 domain-containing protein | - |
| WIR95_RS05485 (WIR95_05485) | truB | 1241898..1242803 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR95_RS05490 (WIR95_05490) | - | 1242934..1243863 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR95_RS05495 (WIR95_05495) | rpsO | 1243967..1244224 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR95_RS05500 (WIR95_05500) | - | 1244464..1245309 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR95_RS05505 (WIR95_05505) | pnp | 1245434..1247545 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR95_RS05510 (WIR95_05510) | - | 1247811..1248554 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR95_RS05515 (WIR95_05515) | - | 1248712..1249959 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR95_RS05520 (WIR95_05520) | - | 1249994..1250239 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR95_RS05525 (WIR95_05525) | dapG | 1250249..1251472 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR95_RS05530 (WIR95_05530) | - | 1251585..1252319 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR95_RS05535 (WIR95_05535) | - | 1252442..1254853 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR95_RS05540 (WIR95_05540) | mnmH | 1254856..1255914 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR95_RS05545 (WIR95_05545) | rimO | 1255908..1257242 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR95_RS05550 (WIR95_05550) | pgsA | 1257229..1257771 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR95_RS05555 (WIR95_05555) | recA | 1258059..1259105 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR95_RS05560 (WIR95_05560) | rny | 1259281..1260822 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR95_RS05565 (WIR95_05565) | - | 1261457..1263238 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR95_RS05570 (WIR95_05570) | lepB | 1263320..1263850 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIR95_RS05575 (WIR95_05575) | - | 1263890..1264714 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR95_RS05580 (WIR95_05580) | - | 1264971..1265879 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR95_RS05585 (WIR95_05585) | purB | 1266023..1267468 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIR95_RS05590 (WIR95_05590) | - | 1267780..1268232 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR95_RS05595 (WIR95_05595) | - | 1268567..1269763 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR95_RS05600 (WIR95_05600) | galT | 1270148..1271098 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR95_RS05605 (WIR95_05605) | - | 1271259..1272011 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR95_RS05610 (WIR95_05610) | - | 1272103..1272879 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIR95_RS05615 (WIR95_05615) | - | 1273194..1275092 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR95_RS05620 (WIR95_05620) | - | 1275220..1276341 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR95_RS05625 (WIR95_05625) | - | 1276540..1276872 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR95_RS05630 (WIR95_05630) | - | 1276859..1277917 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR95_RS05635 (WIR95_05635) | - | 1277910..1278980 (+) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR95_RS05640 (WIR95_05640) | - | 1279082..1279618 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR95_RS05645 (WIR95_05645) | - | 1279734..1280441 (+) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR95_RS05650 (WIR95_05650) | - | 1280443..1281159 (+) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR95_RS05655 (WIR95_05655) | - | 1281161..1281919 (+) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR95_RS05660 (WIR95_05660) | - | 1282054..1283442 (+) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIR95_RS05665 (WIR95_05665) | - | 1283518..1284339 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIR95_RS05670 (WIR95_05670) | - | 1284590..1285744 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR95_RS05675 (WIR95_05675) | - | 1285927..1286127 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR95_RS05680 (WIR95_05680) | - | 1286548..1286976 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR95_RS05685 (WIR95_05685) | - | 1287119..1287874 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR95_RS05690 (WIR95_05690) | - | 1288575..1289081 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR95_RS05695 (WIR95_05695) | - | 1289163..1289483 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR95_RS05700 (WIR95_05700) | - | 1289652..1289849 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR95_RS05705 (WIR95_05705) | - | 1289953..1290393 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR95_RS05710 (WIR95_05710) | - | 1290642..1291085 (+) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIR95_RS05715 (WIR95_05715) | - | 1291090..1292154 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR95_RS05720 (WIR95_05720) | - | 1292168..1292596 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960536 WIR95_RS05555 WP_003428218.1 1258059..1259105(+) (recA) [Clostridioides difficile strain Z1323HCD0021]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960536 WIR95_RS05555 WP_003428218.1 1258059..1259105(+) (recA) [Clostridioides difficile strain Z1323HCD0021]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.