Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS13_RS01415 | Genome accession | NZ_CP149657 |
| Coordinates | 293679..294725 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1323HCD0032 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 261547..342533 | 293679..294725 | within | 0 |
Gene organization within MGE regions
Location: 261547..342533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS13_RS01285 (WIS13_01285) | acd | 261622..263445 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIS13_RS01290 (WIS13_01290) | - | 263660..267958 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS13_RS01295 (WIS13_01295) | rimP | 268162..268623 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS13_RS01300 (WIS13_01300) | nusA | 268653..269807 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS13_RS01305 (WIS13_01305) | - | 269814..270095 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS13_RS01310 (WIS13_01310) | - | 270085..270396 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS13_RS01315 (WIS13_01315) | infB | 270418..272358 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS13_RS01320 (WIS13_01320) | rbfA | 272401..272781 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS13_RS01325 (WIS13_01325) | - | 272762..273439 (+) | 678 | Protein_262 | DHH family phosphoesterase | - |
| WIS13_RS01330 (WIS13_01330) | tnpB | 274088..275206 (+) | 1119 | WP_339072203.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS13_RS01335 (WIS13_01335) | - | 275324..275629 (+) | 306 | Protein_264 | DHHA1 domain-containing protein | - |
| WIS13_RS01340 (WIS13_01340) | truB | 275642..276547 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS13_RS01345 (WIS13_01345) | - | 276678..277607 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS13_RS01350 (WIS13_01350) | rpsO | 277711..277968 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS13_RS01355 (WIS13_01355) | - | 278208..279053 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS13_RS01360 (WIS13_01360) | pnp | 279178..281289 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS13_RS01365 (WIS13_01365) | - | 281555..282298 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS13_RS01370 (WIS13_01370) | - | 282456..283703 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS13_RS01375 (WIS13_01375) | - | 283738..283983 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS13_RS01380 (WIS13_01380) | dapG | 283993..285216 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS13_RS01385 (WIS13_01385) | tnpB | 286005..287123 (+) | 1119 | WP_339072209.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS13_RS01390 (WIS13_01390) | - | 287310..287939 (+) | 630 | WP_021363436.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS13_RS01395 (WIS13_01395) | - | 288062..290473 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS13_RS01400 (WIS13_01400) | mnmH | 290476..291534 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS13_RS01405 (WIS13_01405) | rimO | 291528..292862 (+) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS13_RS01410 (WIS13_01410) | pgsA | 292849..293391 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS13_RS01415 (WIS13_01415) | recA | 293679..294725 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS13_RS01420 (WIS13_01420) | rny | 294901..296442 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS13_RS01425 (WIS13_01425) | - | 296756..299092 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS13_RS01430 (WIS13_01430) | - | 299474..301255 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS13_RS01435 (WIS13_01435) | lepB | 301337..301867 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS13_RS01440 (WIS13_01440) | - | 301907..302731 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS13_RS01445 (WIS13_01445) | - | 302988..303896 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS13_RS01450 (WIS13_01450) | purB | 304040..305485 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS13_RS01455 (WIS13_01455) | - | 305796..306248 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS13_RS01460 (WIS13_01460) | - | 306583..307779 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS13_RS01465 (WIS13_01465) | galT | 308164..309114 (+) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS13_RS01470 (WIS13_01470) | - | 309275..310027 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS13_RS01475 (WIS13_01475) | - | 310119..310895 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS13_RS01480 (WIS13_01480) | - | 311210..313108 (+) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| WIS13_RS01485 (WIS13_01485) | - | 313236..314357 (-) | 1122 | WP_003428201.1 | glycosyltransferase | - |
| WIS13_RS01490 (WIS13_01490) | - | 314556..314888 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS13_RS01495 (WIS13_01495) | - | 314875..315933 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS13_RS01500 (WIS13_01500) | - | 315926..316996 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS13_RS01505 (WIS13_01505) | - | 317098..317634 (+) | 537 | WP_075052540.1 | hypothetical protein | - |
| WIS13_RS01510 (WIS13_01510) | - | 317750..318457 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS13_RS01515 (WIS13_01515) | - | 318459..319175 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS13_RS01520 (WIS13_01520) | - | 319177..319935 (+) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS13_RS01525 (WIS13_01525) | - | 320070..321458 (+) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| WIS13_RS01530 (WIS13_01530) | - | 321534..322355 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS13_RS01535 (WIS13_01535) | - | 322606..323760 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| WIS13_RS01540 (WIS13_01540) | - | 323943..324143 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS13_RS01545 (WIS13_01545) | - | 324564..324992 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS13_RS01550 (WIS13_01550) | - | 325135..325890 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS13_RS01555 (WIS13_01555) | - | 326591..327097 (-) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIS13_RS01560 (WIS13_01560) | - | 327179..327499 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS13_RS01565 (WIS13_01565) | - | 327668..327865 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS13_RS01570 (WIS13_01570) | - | 327969..328409 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS13_RS01575 (WIS13_01575) | - | 328658..329101 (+) | 444 | WP_159376150.1 | DUF6838 family protein | - |
| WIS13_RS01580 (WIS13_01580) | - | 329106..330170 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS13_RS01585 (WIS13_01585) | - | 330184..330612 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS13_RS01590 (WIS13_01590) | - | 330738..331184 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS13_RS01595 (WIS13_01595) | - | 331211..331378 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS13_RS01600 (WIS13_01600) | - | 331378..333831 (+) | 2454 | WP_159376151.1 | hypothetical protein | - |
| WIS13_RS01605 (WIS13_01605) | - | 333831..334253 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS13_RS01610 (WIS13_01610) | - | 334535..336064 (+) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| WIS13_RS01615 (WIS13_01615) | - | 336080..336406 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS13_RS01620 (WIS13_01620) | - | 336406..336834 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS13_RS01625 (WIS13_01625) | - | 336827..337879 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS13_RS01630 (WIS13_01630) | - | 337876..338574 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIS13_RS01635 (WIS13_01635) | - | 338575..339558 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960516 WIS13_RS01415 WP_003428218.1 293679..294725(+) (recA) [Clostridioides difficile strain Z1323HCD0032]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960516 WIS13_RS01415 WP_003428218.1 293679..294725(+) (recA) [Clostridioides difficile strain Z1323HCD0032]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.