Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIR60_RS06555 | Genome accession | NZ_CP149653 |
| Coordinates | 1406539..1407585 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1323HCD0065 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1378167..1455379 | 1406539..1407585 | within | 0 |
Gene organization within MGE regions
Location: 1378167..1455379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIR60_RS06440 (WIR60_06440) | acd | 1378242..1380065 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIR60_RS06445 (WIR60_06445) | - | 1380280..1384578 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIR60_RS06450 (WIR60_06450) | rimP | 1384782..1385243 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIR60_RS06455 (WIR60_06455) | nusA | 1385273..1386427 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIR60_RS06460 (WIR60_06460) | - | 1386434..1386715 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIR60_RS06465 (WIR60_06465) | - | 1386705..1387016 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIR60_RS06470 (WIR60_06470) | infB | 1387038..1388978 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIR60_RS06475 (WIR60_06475) | rbfA | 1389021..1389401 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIR60_RS06480 (WIR60_06480) | - | 1389382..1390365 (+) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIR60_RS06485 (WIR60_06485) | truB | 1390378..1391283 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIR60_RS06490 (WIR60_06490) | - | 1391414..1392343 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIR60_RS06495 (WIR60_06495) | rpsO | 1392447..1392704 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIR60_RS06500 (WIR60_06500) | - | 1392944..1393789 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIR60_RS06505 (WIR60_06505) | pnp | 1393914..1396025 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIR60_RS06510 (WIR60_06510) | - | 1396291..1397034 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIR60_RS06515 (WIR60_06515) | - | 1397192..1398439 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIR60_RS06520 (WIR60_06520) | - | 1398474..1398719 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIR60_RS06525 (WIR60_06525) | dapG | 1398729..1399952 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIR60_RS06530 (WIR60_06530) | - | 1400065..1400799 (+) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIR60_RS06535 (WIR60_06535) | - | 1400922..1403333 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIR60_RS06540 (WIR60_06540) | mnmH | 1403336..1404394 (+) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIR60_RS06545 (WIR60_06545) | rimO | 1404388..1405722 (+) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIR60_RS06550 (WIR60_06550) | pgsA | 1405709..1406251 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIR60_RS06555 (WIR60_06555) | recA | 1406539..1407585 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIR60_RS06560 (WIR60_06560) | rny | 1407761..1409302 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIR60_RS06565 (WIR60_06565) | - | 1409616..1411952 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIR60_RS06570 (WIR60_06570) | - | 1412334..1414115 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIR60_RS06575 (WIR60_06575) | lepB | 1414197..1414727 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIR60_RS06580 (WIR60_06580) | - | 1414767..1415591 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIR60_RS06585 (WIR60_06585) | - | 1415848..1416756 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIR60_RS06590 (WIR60_06590) | purB | 1416900..1418345 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIR60_RS06595 (WIR60_06595) | - | 1418656..1419108 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIR60_RS06600 (WIR60_06600) | - | 1419443..1420639 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIR60_RS06605 (WIR60_06605) | galT | 1421024..1421974 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIR60_RS06610 (WIR60_06610) | - | 1422135..1422887 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIR60_RS06615 (WIR60_06615) | - | 1422979..1423755 (-) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIR60_RS06620 (WIR60_06620) | - | 1424070..1425968 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIR60_RS06625 (WIR60_06625) | - | 1426096..1427217 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIR60_RS06630 (WIR60_06630) | - | 1427416..1427748 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIR60_RS06635 (WIR60_06635) | - | 1427735..1428793 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIR60_RS06640 (WIR60_06640) | - | 1428786..1429856 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIR60_RS06645 (WIR60_06645) | - | 1429958..1430494 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| WIR60_RS06650 (WIR60_06650) | - | 1430610..1431317 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIR60_RS06655 (WIR60_06655) | - | 1431319..1432035 (+) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIR60_RS06660 (WIR60_06660) | - | 1432037..1432795 (+) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIR60_RS06665 (WIR60_06665) | - | 1432930..1434318 (+) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIR60_RS06670 (WIR60_06670) | - | 1434394..1435215 (-) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIR60_RS06675 (WIR60_06675) | - | 1435466..1436620 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIR60_RS06680 (WIR60_06680) | - | 1436803..1437003 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIR60_RS06685 (WIR60_06685) | - | 1437424..1437852 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIR60_RS06690 (WIR60_06690) | - | 1437995..1438750 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIR60_RS06695 (WIR60_06695) | - | 1439451..1439957 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIR60_RS06700 (WIR60_06700) | - | 1440039..1440359 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIR60_RS06705 (WIR60_06705) | - | 1440528..1440725 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIR60_RS06710 (WIR60_06710) | - | 1440830..1441270 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIR60_RS06715 (WIR60_06715) | - | 1441519..1441962 (+) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIR60_RS06720 (WIR60_06720) | - | 1441967..1443031 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIR60_RS06725 (WIR60_06725) | - | 1443045..1443473 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIR60_RS06730 (WIR60_06730) | - | 1443587..1444033 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIR60_RS06735 (WIR60_06735) | - | 1444060..1444227 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIR60_RS06740 (WIR60_06740) | - | 1444227..1446680 (+) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIR60_RS06745 (WIR60_06745) | - | 1446680..1447102 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIR60_RS06750 (WIR60_06750) | - | 1447384..1448913 (+) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIR60_RS06755 (WIR60_06755) | - | 1448929..1449255 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIR60_RS06760 (WIR60_06760) | - | 1449255..1449683 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIR60_RS06765 (WIR60_06765) | - | 1449676..1450728 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIR60_RS06770 (WIR60_06770) | - | 1450725..1451423 (+) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIR60_RS06775 (WIR60_06775) | - | 1451424..1452407 (+) | 984 | WP_003438452.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960488 WIR60_RS06555 WP_003428218.1 1406539..1407585(+) (recA) [Clostridioides difficile strain Z1323HCD0065]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960488 WIR60_RS06555 WP_003428218.1 1406539..1407585(+) (recA) [Clostridioides difficile strain Z1323HCD0065]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.