Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS51_RS06850 | Genome accession | NZ_CP149652 |
| Coordinates | 1418677..1419723 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1323HCD0085 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1386545..1467531 | 1418677..1419723 | within | 0 |
Gene organization within MGE regions
Location: 1386545..1467531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS51_RS06720 (WIS51_06720) | acd | 1386620..1388443 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| WIS51_RS06725 (WIS51_06725) | - | 1388658..1392956 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS51_RS06730 (WIS51_06730) | rimP | 1393160..1393621 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS51_RS06735 (WIS51_06735) | nusA | 1393651..1394805 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS51_RS06740 (WIS51_06740) | - | 1394812..1395093 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS51_RS06745 (WIS51_06745) | - | 1395083..1395394 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS51_RS06750 (WIS51_06750) | infB | 1395416..1397356 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS51_RS06755 (WIS51_06755) | rbfA | 1397399..1397779 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS51_RS06760 (WIS51_06760) | - | 1397760..1398437 (+) | 678 | Protein_1238 | DHH family phosphoesterase | - |
| WIS51_RS06765 (WIS51_06765) | tnpB | 1399086..1400204 (+) | 1119 | WP_339072203.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS51_RS06770 (WIS51_06770) | - | 1400322..1400627 (+) | 306 | Protein_1240 | DHHA1 domain-containing protein | - |
| WIS51_RS06775 (WIS51_06775) | truB | 1400640..1401545 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS51_RS06780 (WIS51_06780) | - | 1401676..1402605 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS51_RS06785 (WIS51_06785) | rpsO | 1402709..1402966 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS51_RS06790 (WIS51_06790) | - | 1403206..1404051 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS51_RS06795 (WIS51_06795) | pnp | 1404176..1406287 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS51_RS06800 (WIS51_06800) | - | 1406553..1407296 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS51_RS06805 (WIS51_06805) | - | 1407454..1408701 (+) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS51_RS06810 (WIS51_06810) | - | 1408736..1408981 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS51_RS06815 (WIS51_06815) | dapG | 1408991..1410214 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS51_RS06820 (WIS51_06820) | tnpB | 1411003..1412121 (+) | 1119 | WP_339072209.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS51_RS06825 (WIS51_06825) | - | 1412308..1412937 (+) | 630 | WP_021363436.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS51_RS06830 (WIS51_06830) | - | 1413060..1415471 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS51_RS06835 (WIS51_06835) | mnmH | 1415474..1416532 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS51_RS06840 (WIS51_06840) | rimO | 1416526..1417860 (+) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS51_RS06845 (WIS51_06845) | pgsA | 1417847..1418389 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS51_RS06850 (WIS51_06850) | recA | 1418677..1419723 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS51_RS06855 (WIS51_06855) | rny | 1419899..1421440 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS51_RS06860 (WIS51_06860) | - | 1421754..1424090 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS51_RS06865 (WIS51_06865) | - | 1424472..1426253 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS51_RS06870 (WIS51_06870) | lepB | 1426335..1426865 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS51_RS06875 (WIS51_06875) | - | 1426905..1427729 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS51_RS06880 (WIS51_06880) | - | 1427986..1428894 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS51_RS06885 (WIS51_06885) | purB | 1429038..1430483 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS51_RS06890 (WIS51_06890) | - | 1430794..1431246 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS51_RS06895 (WIS51_06895) | - | 1431581..1432777 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS51_RS06900 (WIS51_06900) | galT | 1433162..1434112 (+) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS51_RS06905 (WIS51_06905) | - | 1434273..1435025 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS51_RS06910 (WIS51_06910) | - | 1435117..1435893 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS51_RS06915 (WIS51_06915) | - | 1436208..1438106 (+) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| WIS51_RS06920 (WIS51_06920) | - | 1438234..1439355 (-) | 1122 | WP_003428201.1 | glycosyltransferase | - |
| WIS51_RS06925 (WIS51_06925) | - | 1439554..1439886 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS51_RS06930 (WIS51_06930) | - | 1439873..1440931 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS51_RS06935 (WIS51_06935) | - | 1440924..1441994 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS51_RS06940 (WIS51_06940) | - | 1442096..1442632 (+) | 537 | WP_075052540.1 | hypothetical protein | - |
| WIS51_RS06945 (WIS51_06945) | - | 1442748..1443455 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS51_RS06950 (WIS51_06950) | - | 1443457..1444173 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS51_RS06955 (WIS51_06955) | - | 1444175..1444933 (+) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS51_RS06960 (WIS51_06960) | - | 1445068..1446456 (+) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| WIS51_RS06965 (WIS51_06965) | - | 1446532..1447353 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS51_RS06970 (WIS51_06970) | - | 1447604..1448758 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| WIS51_RS06975 (WIS51_06975) | - | 1448941..1449141 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS51_RS06980 (WIS51_06980) | - | 1449562..1449990 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS51_RS06985 (WIS51_06985) | - | 1450133..1450888 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS51_RS06990 (WIS51_06990) | - | 1451589..1452095 (-) | 507 | WP_011861186.1 | hypothetical protein | - |
| WIS51_RS06995 (WIS51_06995) | - | 1452177..1452497 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS51_RS07000 (WIS51_07000) | - | 1452666..1452863 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS51_RS07005 (WIS51_07005) | - | 1452967..1453407 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS51_RS07010 (WIS51_07010) | - | 1453656..1454099 (+) | 444 | WP_159376150.1 | DUF6838 family protein | - |
| WIS51_RS07015 (WIS51_07015) | - | 1454104..1455168 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS51_RS07020 (WIS51_07020) | - | 1455182..1455610 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS51_RS07025 (WIS51_07025) | - | 1455736..1456182 (+) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS51_RS07030 (WIS51_07030) | - | 1456209..1456376 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS51_RS07035 (WIS51_07035) | - | 1456376..1458829 (+) | 2454 | WP_159376151.1 | hypothetical protein | - |
| WIS51_RS07040 (WIS51_07040) | - | 1458829..1459251 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS51_RS07045 (WIS51_07045) | - | 1459533..1461062 (+) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| WIS51_RS07050 (WIS51_07050) | - | 1461078..1461404 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS51_RS07055 (WIS51_07055) | - | 1461404..1461832 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS51_RS07060 (WIS51_07060) | - | 1461825..1462877 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS51_RS07065 (WIS51_07065) | - | 1462874..1463572 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIS51_RS07070 (WIS51_07070) | - | 1463573..1464556 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960471 WIS51_RS06850 WP_003428218.1 1418677..1419723(+) (recA) [Clostridioides difficile strain Z1323HCD0085]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960471 WIS51_RS06850 WP_003428218.1 1418677..1419723(+) (recA) [Clostridioides difficile strain Z1323HCD0085]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.