Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WEU38_RS07025 Genome accession   NZ_CP149437
Coordinates   1677994..1679064 (-) Length   356 a.a.
NCBI ID   WP_015218968.1    Uniprot ID   K9Z3D8
Organism   Cyanobacterium aponinum AL20118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672994..1684064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WEU38_RS07005 (WEU38_06995) groES 1673708..1674019 (+) 312 WP_015218964.1 co-chaperone GroES -
  WEU38_RS07010 (WEU38_07000) groL 1674129..1675754 (+) 1626 WP_015218965.1 chaperonin GroEL -
  WEU38_RS07015 (WEU38_07005) - 1675848..1676486 (+) 639 WP_015218966.1 histidine phosphatase family protein -
  WEU38_RS07020 (WEU38_07010) - 1676639..1677820 (+) 1182 WP_320002131.1 RtcB family protein -
  WEU38_RS07025 (WEU38_07015) recA 1677994..1679064 (-) 1071 WP_015218968.1 recombinase RecA Machinery gene
  WEU38_RS07030 (WEU38_07020) - 1679795..1679944 (+) 150 WP_320002132.1 DNA-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37987.19 Da        Isoelectric Point: 4.6848

>NTDB_id=959072 WEU38_RS07025 WP_015218968.1 1677994..1679064(-) (recA) [Cyanobacterium aponinum AL20118]
MATSTMAQNPDKEKALNLVLNQIERSFGKGSIMRLGDAAKMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTL
ALHAIAEVQKAGGIAAFVDAEHALDPTYSAALGVDIDNLLVAQPDNGESALEIVDQLVRSSAVDIVVVDSVAALVPRAEI
EGEMGDLQVGLQARLMSKALRKVAGNIGKSGATVIFLNQLRQKIGISYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGS
EGEYGIRAKVKVAKNKVAPPFRIAEFDIIFGSGISRIGCLLDLAEKTNIVNRKGAWYSYEGDNIAQGRDNAVKYLEENLE
IAEAIEEKVKAELEINNVSFGSSGDDSDDDNFDMDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=959072 WEU38_RS07025 WP_015218968.1 1677994..1679064(-) (recA) [Cyanobacterium aponinum AL20118]
ATGGCTACAAGTACAATGGCTCAAAACCCCGATAAGGAAAAAGCATTAAACCTCGTCCTCAATCAGATTGAGCGTAGTTT
TGGCAAAGGCTCAATAATGCGTCTTGGAGATGCCGCAAAAATGAAGGTAGAAACCATCTCTAGCGGTGCTTTAACCTTGG
ATCTCGCCCTCGGTGGCGGTTTGCCTAAAGGTCGTATTATTGAAATCTATGGTCCTGAAAGCTCAGGTAAAACAACCCTT
GCCCTTCATGCGATCGCAGAAGTTCAAAAAGCTGGTGGCATCGCCGCCTTTGTAGATGCAGAACACGCATTAGATCCTAC
TTACTCTGCCGCTTTAGGAGTGGACATTGACAATTTACTTGTAGCTCAACCTGACAATGGTGAATCTGCTTTAGAAATTG
TCGATCAATTAGTACGTAGTTCCGCCGTAGATATTGTTGTAGTTGACTCCGTTGCCGCTCTTGTGCCTCGTGCAGAAATA
GAAGGAGAAATGGGAGATTTACAAGTAGGCTTACAAGCTCGTTTGATGAGTAAAGCATTAAGAAAAGTTGCGGGAAATAT
TGGTAAATCTGGAGCAACAGTCATCTTTTTAAACCAACTACGTCAAAAAATCGGTATTAGCTACGGCAGTCCAGAAGTAA
CTACAGGAGGTACAGCTTTAAAATTTTATGCTTCTGTCCGTTTAGATATTCGTCGTATTCAAACCTTGAAAAAGGGTAGC
GAAGGGGAATACGGAATTCGGGCAAAAGTAAAAGTGGCTAAAAATAAAGTTGCTCCACCTTTTCGCATTGCTGAATTTGA
CATTATTTTTGGTTCTGGTATTTCTCGTATTGGTTGTTTGTTAGACTTAGCCGAAAAAACCAACATTGTTAACCGAAAAG
GGGCATGGTACAGCTATGAAGGTGATAACATTGCTCAAGGTCGAGATAATGCCGTCAAATACTTAGAGGAAAATCTCGAA
ATTGCCGAGGCCATTGAGGAAAAAGTCAAAGCTGAATTAGAGATTAATAACGTCAGTTTCGGAAGTTCAGGGGATGATTC
CGATGATGATAATTTTGACATGGATGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9Z3D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

60.807

97.472

0.593
  recA Acinetobacter baumannii D1279779

63.889

91.011

0.581
  recA Glaesserella parasuis strain SC1401

58.501

97.472

0.57
  recA Helicobacter pylori 26695

60.661

93.539

0.567
  recA Pseudomonas stutzeri DSM 10701

61.585

92.135

0.567
  recA Helicobacter pylori strain NCTC11637

61.468

91.854

0.565
  recA Neisseria gonorrhoeae MS11

61.92

90.73

0.562
  recA Neisseria gonorrhoeae strain FA1090

61.92

90.73

0.562
  recA Neisseria gonorrhoeae MS11

61.92

90.73

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.358

95.787

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.982

93.82

0.553
  recA Ralstonia pseudosolanacearum GMI1000

59.878

92.416

0.553
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.494

91.011

0.551
  recA Vibrio cholerae strain A1552

60.494

91.011

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

59.756

92.135

0.551
  recA Streptococcus pneumoniae D39

59.633

91.854

0.548
  recA Streptococcus pneumoniae Rx1

59.633

91.854

0.548
  recA Streptococcus pneumoniae R6

59.633

91.854

0.548
  recA Streptococcus pneumoniae TIGR4

59.633

91.854

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.692

94.944

0.548
  recA Streptococcus mitis NCTC 12261

59.327

91.854

0.545
  recA Streptococcus pyogenes NZ131

54.52

99.438

0.542
  recA Streptococcus mitis SK321

59.021

91.854

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.006

92.978

0.539
  recA Streptococcus mutans UA159

58.589

91.573

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.573

92.135

0.503