Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WJM78_RS17925 Genome accession   NZ_CP149129
Coordinates   3899779..3900840 (-) Length   353 a.a.
NCBI ID   WP_108537505.1    Uniprot ID   -
Organism   Aeromonas popoffii strain BE5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3894779..3905840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM78_RS17910 - 3894821..3896068 (-) 1248 WP_339010853.1 aspartate kinase -
  WJM78_RS17915 alaS 3896085..3898709 (-) 2625 WP_339010854.1 alanine--tRNA ligase -
  WJM78_RS17920 - 3899240..3899743 (-) 504 WP_339010855.1 regulatory protein RecX -
  WJM78_RS17925 recA 3899779..3900840 (-) 1062 WP_108537505.1 recombinase RecA Machinery gene
  WJM78_RS17930 - 3900921..3901412 (-) 492 WP_339010856.1 nicotinamide-nucleotide amidohydrolase family protein -
  WJM78_RS17935 mutS 3901777..3904296 (+) 2520 WP_339015916.1 DNA mismatch repair protein MutS -
  WJM78_RS17940 - 3904381..3904509 (-) 129 WP_287147080.1 hypothetical protein -
  WJM78_RS17945 - 3904482..3904809 (-) 328 Protein_3462 BCCT family transporter -
  WJM78_RS17950 - 3904823..3905029 (-) 207 Protein_3463 hypothetical protein -
  WJM78_RS17955 - 3905178..3905657 (+) 480 WP_042035257.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37926.65 Da        Isoelectric Point: 4.8950

>NTDB_id=956744 WJM78_RS17925 WP_108537505.1 3899779..3900840(-) (recA) [Aeromonas popoffii strain BE5]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFSENKAMAAEVEA
RLRELLLSGDAPAEKPVVAEADELEAESEQEFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=956744 WJM78_RS17925 WP_108537505.1 3899779..3900840(-) (recA) [Aeromonas popoffii strain BE5]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCTACCGGTTCCCTCTCTTTGGACGTGGCGCTTGGCATCGGCG
GCTTGCCGTGTGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACCCTCACCCTGCAGGTGATTGCG
GAAGCCCAGAAAAAAGGCAAGGTTTGTGCCTTTATCGATGCGGAACACGCCCTCGACCCCATCTATGCGGCCAAGCTGGG
CGTCAACGTTGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGCGACATGCTGGTTCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCGGTGGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGGGAGATGGGCGAC
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAAAACGCCAACTGCCT
CTGTATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACGACTGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGCATCGGCGCTATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTTGCCCCGCCCTTCAAGCAGGCTGAATTCCAGATCTTCTACGGTGTTGGTAT
CTCCAAAGAGGGCGAACTGGTGGATCTGGGCGTCAAGCACAAGCTGATCGATAAGGCCGGCGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTCTTCTCCGAGAACAAGGCGATGGCGGCCGAGGTAGAAGCC
AGACTGCGTGAACTGCTGCTCTCCGGTGATGCGCCGGCCGAGAAGCCGGTGGTGGCGGAGGCTGACGAGCTCGAAGCCGA
AAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

75.645

98.867

0.748
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.645

98.867

0.748
  recA Pseudomonas stutzeri DSM 10701

77.353

96.317

0.745
  recA Glaesserella parasuis strain SC1401

69.405

100

0.694
  recA Acinetobacter baumannii D1279779

74.695

92.918

0.694
  recA Acinetobacter baylyi ADP1

74.085

92.918

0.688
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.351

0.663
  recA Ralstonia pseudosolanacearum GMI1000

74.92

88.102

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.144

90.368

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.768

0.595
  recA Helicobacter pylori strain NCTC11637

64.615

92.068

0.595
  recA Helicobacter pylori 26695

64

92.068

0.589
  recA Streptococcus mitis SK321

59.259

99.433

0.589
  recA Streptococcus pneumoniae TIGR4

58.739

98.867

0.581
  recA Streptococcus pneumoniae Rx1

58.739

98.867

0.581
  recA Streptococcus pneumoniae D39

58.739

98.867

0.581
  recA Streptococcus pneumoniae R6

58.739

98.867

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.935

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

59.118

96.317

0.569
  recA Streptococcus mitis NCTC 12261

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.878

93.201

0.558
  recA Streptococcus mutans UA159

60.372

91.501

0.552
  recA Streptococcus pyogenes NZ131

60.062

91.501

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.501

0.533