Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WHX56_RS13555 Genome accession   NZ_CP148753
Coordinates   2936309..2937370 (+) Length   353 a.a.
NCBI ID   WP_129242758.1    Uniprot ID   -
Organism   Achromobacter veterisilvae strain AB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2931309..2942370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX56_RS13535 (WHX56_13535) - 2931432..2931641 (+) 210 WP_129242754.1 hypothetical protein -
  WHX56_RS13540 (WHX56_13540) - 2932011..2933687 (-) 1677 WP_129242756.1 MFS transporter -
  WHX56_RS13545 (WHX56_13545) - 2933870..2935246 (-) 1377 WP_129242811.1 sensor histidine kinase -
  WHX56_RS13550 (WHX56_13550) - 2935362..2936051 (-) 690 WP_062684519.1 response regulator transcription factor -
  WHX56_RS13555 (WHX56_13555) recA 2936309..2937370 (+) 1062 WP_129242758.1 recombinase RecA Machinery gene
  WHX56_RS13560 (WHX56_13560) recX 2937495..2938184 (+) 690 WP_129242760.1 recombination regulator RecX -
  WHX56_RS13565 (WHX56_13565) - 2938624..2939541 (-) 918 WP_129242762.1 LysR family transcriptional regulator -
  WHX56_RS13570 (WHX56_13570) metE 2939682..2941979 (+) 2298 WP_338881462.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37933.35 Da        Isoelectric Point: 5.5564

>NTDB_id=955472 WHX56_RS13555 WP_129242758.1 2936309..2937370(+) (recA) [Achromobacter veterisilvae strain AB1]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
KSMAIEIENRVRENQGIVSRAAEFVPTAEDTAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=955472 WHX56_RS13555 WP_129242758.1 2936309..2937370(+) (recA) [Achromobacter veterisilvae strain AB1]
ATGGACGACAAAACCACCAAGGCCGCCGCATCGGAAAAGGCCAAGGCGCTTGCCGCCGCGCTCTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCTCGCATGACATCCAGGTGGTTTCCACGGGGTCGCTCG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGGGGCCGCGTGGTCGAGATCTACGGTCCGGAATCGTCGGGCAAG
ACCACGCTGACCCTGCAGGTCATCGCTGAAATGCAGAAGATCGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAGTACGCCTCCAAGCTGGGCGTCAACCTGACCGACCTGCTGATCTCGCAGCCGGACACGGGCGAACAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTGGCGGCCCTGGTGCCCAAG
GCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGCCACCATCAAGCGCACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCGTCCGTGCGCCTGGACATCCGCCGCATCGGCTCGATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCGCCCCCGTTCAAGCAGGCCGA
GTTCGACATCATGTACGGCGCCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGGCCGCCAATGTGGTGGACA
AGTCCGGCGCGTGGTACAGCTACAACGGCAACCGCATCGGCCAGGGCAAGGACAATGTCCGCGAATACCTGAAAGAGCAC
AAGAGCATGGCCATCGAGATCGAGAACCGCGTGCGCGAGAACCAGGGCATCGTCAGCCGCGCGGCCGAGTTCGTGCCCAC
GGCGGAAGACACCGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.534

99.717

0.813
  recA Pseudomonas stutzeri DSM 10701

72.141

96.601

0.697
  recA Acinetobacter baylyi ADP1

69.795

96.601

0.674
  recA Vibrio cholerae strain A1552

73.52

90.935

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.52

90.935

0.669
  recA Acinetobacter baumannii D1279779

73.209

90.935

0.666
  recA Neisseria gonorrhoeae MS11

71.646

92.918

0.666
  recA Neisseria gonorrhoeae MS11

71.646

92.918

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.646

92.918

0.666
  recA Glaesserella parasuis strain SC1401

71.651

90.935

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.565

94.334

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

62.573

96.884

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Helicobacter pylori 26695

61.095

98.3

0.601
  recA Helicobacter pylori strain NCTC11637

60.807

98.3

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.635

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.501

0.569
  recA Streptococcus pneumoniae TIGR4

58.824

96.317

0.567
  recA Streptococcus pneumoniae D39

58.824

96.317

0.567
  recA Streptococcus pneumoniae R6

58.824

96.317

0.567
  recA Streptococcus pneumoniae Rx1

58.824

96.317

0.567
  recA Lactococcus lactis subsp. cremoris KW2

58.529

96.317

0.564
  recA Streptococcus mitis NCTC 12261

58.235

96.317

0.561
  recA Streptococcus mitis SK321

58.235

96.317

0.561
  recA Streptococcus pyogenes NZ131

58.806

94.901

0.558
  recA Streptococcus mutans UA159

57.059

96.317

0.55