Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WHX55_RS05825 Genome accession   NZ_CP148752
Coordinates   1307147..1308205 (+) Length   352 a.a.
NCBI ID   WP_353742221.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1302147..1313205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS05805 (WHX55_05805) mutS 1302407..1304986 (-) 2580 WP_353742220.1 DNA mismatch repair protein MutS -
  WHX55_RS05810 (WHX55_05810) - 1305194..1305928 (+) 735 WP_150757397.1 XRE family transcriptional regulator -
  WHX55_RS05815 (WHX55_05815) - 1306103..1306444 (+) 342 WP_150727665.1 phage holin family protein -
  WHX55_RS05820 (WHX55_05820) - 1306563..1307063 (+) 501 WP_056722269.1 CinA family protein -
  WHX55_RS05825 (WHX55_05825) recA 1307147..1308205 (+) 1059 WP_353742221.1 recombinase RecA Machinery gene
  WHX55_RS05830 (WHX55_05830) recX 1308214..1308681 (+) 468 WP_353742222.1 recombination regulator RecX -
  WHX55_RS05835 (WHX55_05835) - 1308727..1309845 (-) 1119 WP_150727662.1 TIGR00730 family Rossman fold protein -
  WHX55_RS05840 (WHX55_05840) - 1310326..1310520 (+) 195 WP_150754186.1 hypothetical protein -
  WHX55_RS05845 (WHX55_05845) - 1310521..1310943 (-) 423 WP_150727660.1 quorum-sensing-regulated virulence factor family protein -
  WHX55_RS05850 (WHX55_05850) - 1311133..1311891 (+) 759 WP_150754185.1 tRNA-uridine aminocarboxypropyltransferase -
  WHX55_RS05855 (WHX55_05855) erdR 1312110..1312760 (+) 651 WP_150727658.1 response regulator transcription factor ErdR -
  WHX55_RS05860 (WHX55_05860) - 1312836..1313198 (+) 363 WP_150754183.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37423.87 Da        Isoelectric Point: 5.3031

>NTDB_id=955445 WHX55_RS05825 WP_353742221.1 1307147..1308205(+) (recA) [Pseudomonas fluorescens strain AB1]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPDVATKLEK
QLRDKLLSPSSVADAKASAVKETEDDLADADI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=955445 WHX55_RS05825 WP_353742221.1 1307147..1308205(+) (recA) [Pseudomonas fluorescens strain AB1]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCCACTGGCTCTCTGGGTCTGGACATTGCTCTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTGACCTTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACTTGCGCATTCGTCGACGCCGAACACGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCAC
TGAAGTTCTACGCATCGGTTCGTCTGGACATCCGTCGTACCGGCGCGGTGAAAGATGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTAGCTTCGCCGTTCCGCCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACTTGGGTGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGACGTCGCGACAAAGCTGGAGAAG
CAACTGCGTGACAAGCTGCTGTCCCCTTCGTCGGTAGCAGACGCCAAAGCTTCTGCGGTCAAAGAGACCGAAGACGATCT
GGCTGACGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.216

100

0.872
  recA Acinetobacter baylyi ADP1

72.543

98.295

0.713
  recA Glaesserella parasuis strain SC1401

71.221

97.727

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.494

94.318

0.693
  recA Vibrio cholerae strain A1552

73.494

94.318

0.693
  recA Acinetobacter baumannii D1279779

73.476

93.182

0.685
  recA Ralstonia pseudosolanacearum GMI1000

69.552

95.17

0.662
  recA Neisseria gonorrhoeae MS11

70.679

92.045

0.651
  recA Neisseria gonorrhoeae MS11

70.679

92.045

0.651
  recA Neisseria gonorrhoeae strain FA1090

70.679

92.045

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

92.898

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

94.034

0.582
  recA Helicobacter pylori strain NCTC11637

58.551

98.011

0.574
  recA Streptococcus mutans UA159

56.18

100

0.568
  recA Helicobacter pylori 26695

57.971

98.011

0.568
  recA Streptococcus pyogenes NZ131

56.125

99.716

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

91.193

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

56.686

97.727

0.554
  recA Streptococcus mitis NCTC 12261

56.509

96.023

0.543
  recA Streptococcus mitis SK321

58.333

92.045

0.537
  recA Streptococcus pneumoniae Rx1

57.975

92.614

0.537
  recA Streptococcus pneumoniae D39

57.975

92.614

0.537
  recA Streptococcus pneumoniae R6

57.975

92.614

0.537
  recA Streptococcus pneumoniae TIGR4

57.975

92.614

0.537
  recA Lactococcus lactis subsp. cremoris KW2

56.119

95.17

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56

92.33

0.517