Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WHF41_RS06475 Genome accession   NZ_CP148032
Coordinates   1276717..1277757 (+) Length   346 a.a.
NCBI ID   WP_019226692.1    Uniprot ID   A0A1C2XW01
Organism   MAG: Dehalobacter restrictus isolate SAD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271717..1282757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHF41_RS06460 (WHF41_06420) rimO 1273124..1274449 (+) 1326 WP_019226763.1 30S ribosomal protein S12 methylthiotransferase RimO -
  WHF41_RS06465 (WHF41_06425) pgsA 1274446..1275009 (+) 564 WP_019226762.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHF41_RS06470 (WHF41_06430) - 1275339..1276583 (+) 1245 WP_019226693.1 competence/damage-inducible protein A -
  WHF41_RS06475 (WHF41_06435) recA 1276717..1277757 (+) 1041 WP_019226692.1 recombinase RecA Machinery gene
  WHF41_RS06480 (WHF41_06440) - 1277747..1278277 (+) 531 WP_019226691.1 regulatory protein RecX -
  WHF41_RS06485 (WHF41_06445) rny 1278527..1280095 (+) 1569 WP_176714405.1 ribonuclease Y -
  WHF41_RS06490 (WHF41_06450) - 1280382..1280894 (+) 513 WP_019226690.1 hypothetical protein -
  WHF41_RS06495 (WHF41_06455) - 1280928..1281698 (+) 771 WP_019226689.1 TIGR00282 family metallophosphoesterase -
  WHF41_RS06500 (WHF41_06460) - 1281851..1282111 (+) 261 WP_015042391.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37195.56 Da        Isoelectric Point: 5.7319

>NTDB_id=950117 WHF41_RS06475 WP_019226692.1 1276717..1277757(+) (recA) [MAG: Dehalobacter restrictus isolate SAD]
MATPDKLKALDIALSQIEKQFGKGAIMKLGEASDRMAVETISTGSLALDLALGVGGVPRGRVIEVYGPESSGKTTVTLHI
IAEAQKTGGVAAFIDAEHALDPVYARALGVNVDDLLVSQPDTGEQALEICEALVRSGAVDVIVIDSVAALVPRAEIEGEM
GDSHMGLHARLMSQALRKLTGCISKSHTCVIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQEIIG
NRTRVKVVKNKVAPPFNFADFDLVYGEGISREGSIVDMGSETGVLMKSGAWYSYNGERLGQGRENVKDFLRQHPDIAAEI
ESKVRNLVLVSKDKTKGAQDDSMNDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=950117 WHF41_RS06475 WP_019226692.1 1276717..1277757(+) (recA) [MAG: Dehalobacter restrictus isolate SAD]
ATGGCTACTCCAGATAAACTAAAAGCATTGGATATTGCGCTGAGCCAAATTGAAAAGCAGTTTGGCAAGGGAGCGATTAT
GAAACTCGGCGAAGCTTCGGACAGAATGGCTGTTGAGACGATTTCAACAGGTTCATTGGCACTGGATTTGGCTTTAGGCG
TTGGCGGAGTTCCCAGAGGCCGGGTAATAGAGGTATATGGACCGGAGTCTTCGGGGAAAACCACCGTAACGCTGCATATT
ATTGCTGAAGCACAAAAAACAGGCGGCGTTGCAGCTTTTATTGATGCAGAGCATGCCCTTGACCCAGTATATGCCCGTGC
GCTGGGTGTGAATGTCGACGATCTGCTGGTTTCTCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCTGTGAAGCCCTTG
TTCGCAGCGGCGCGGTTGATGTCATTGTTATTGACTCGGTGGCGGCACTCGTGCCACGGGCTGAAATCGAAGGGGAGATG
GGCGATTCCCATATGGGGCTGCATGCCCGTCTGATGTCCCAGGCGTTGCGCAAACTTACCGGGTGCATCAGTAAAAGCCA
TACCTGTGTCATCTTTATTAATCAGATCAGGGAGAAAGTCGGCGTGATGTTCGGCAACCCGGAGACGACGACCGGGGGAC
GAGCGCTGAAATTTTATGCTTCAGTCCGGCTGGAAGTCAAAAAGCAGGATGTCATCAAGCAGGGGCAGGAAATCATCGGC
AACCGGACCCGCGTAAAGGTCGTCAAAAACAAGGTTGCACCGCCGTTTAACTTTGCTGATTTCGACCTGGTTTATGGCGA
AGGGATATCCAGGGAAGGCAGTATTGTCGATATGGGATCGGAAACAGGTGTCCTTATGAAATCGGGCGCCTGGTATTCCT
ACAATGGCGAAAGGCTTGGACAGGGAAGAGAGAATGTCAAGGACTTTCTGCGTCAGCATCCAGATATTGCTGCAGAGATT
GAGAGCAAAGTGCGCAATCTGGTTCTGGTCTCGAAAGACAAGACCAAGGGCGCTCAGGACGACAGCATGAATGATGAGTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2XW01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.028

92.775

0.659
  recA Latilactobacillus sakei subsp. sakei 23K

67.692

93.931

0.636
  recA Neisseria gonorrhoeae MS11

64.793

97.688

0.633
  recA Neisseria gonorrhoeae MS11

64.793

97.688

0.633
  recA Neisseria gonorrhoeae strain FA1090

64.793

97.688

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.55

89.306

0.63
  recA Vibrio cholerae strain A1552

63.158

98.844

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

98.844

0.624
  recA Glaesserella parasuis strain SC1401

63.343

98.555

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

97.688

0.621
  recA Pseudomonas stutzeri DSM 10701

64.458

95.954

0.618
  recA Streptococcus mutans UA159

62.353

98.266

0.613
  recA Streptococcus mitis NCTC 12261

60.286

100

0.61
  recA Streptococcus mitis SK321

60.286

100

0.61
  recA Acinetobacter baylyi ADP1

62.13

97.688

0.607
  recA Streptococcus pyogenes NZ131

64

93.931

0.601
  recA Acinetobacter baumannii D1279779

63.303

94.509

0.598
  recA Streptococcus pneumoniae R6

62.577

94.22

0.59
  recA Streptococcus pneumoniae Rx1

62.577

94.22

0.59
  recA Streptococcus pneumoniae D39

62.577

94.22

0.59
  recA Streptococcus pneumoniae TIGR4

62.577

94.22

0.59
  recA Lactococcus lactis subsp. cremoris KW2

62.422

93.064

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.305

92.775

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

94.22

0.575
  recA Helicobacter pylori 26695

61.801

93.064

0.575
  recA Helicobacter pylori strain NCTC11637

61.801

93.064

0.575