Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACHP5S_RS00575 Genome accession   NZ_CP172127
Coordinates   113671..115098 (-) Length   475 a.a.
NCBI ID   WP_000980602.1    Uniprot ID   -
Organism   Escherichia coli strain GF43     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108671..120098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5S_RS00545 (ACHP5S_00545) yeeZ 108726..109550 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  ACHP5S_RS00550 (ACHP5S_00550) yeeY 109596..110525 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  ACHP5S_RS00555 (ACHP5S_00555) yoeI 110740..110802 (+) 63 WP_010723108.1 membrane protein YoeI -
  ACHP5S_RS00560 (ACHP5S_00560) plaP 110792..112150 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ACHP5S_RS00565 (ACHP5S_00565) tsuA 112329..113387 (+) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  ACHP5S_RS00570 (ACHP5S_00570) tsuB 113401..113628 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ACHP5S_RS00575 (ACHP5S_00575) sbcB 113671..115098 (-) 1428 WP_000980602.1 exodeoxyribonuclease I Machinery gene
  ACHP5S_RS00580 (ACHP5S_00580) dacD 115307..116473 (+) 1167 WP_042003870.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ACHP5S_RS00585 (ACHP5S_00585) sbmC 116592..117065 (+) 474 WP_042003869.1 DNA gyrase inhibitor SbmC -
  ACHP5S_RS00590 (ACHP5S_00590) yeeA 117263..118321 (+) 1059 WP_001200891.1 FUSC family protein -
  ACHP5S_RS00595 (ACHP5S_00595) tmaR 118493..118822 (+) 330 WP_000450409.1 DUF496 family protein -
  ACHP5S_RS00600 (ACHP5S_00600) - 118923..119219 (-) 297 Protein_119 EutP/PduV family microcompartment system protein -
  ACHP5S_RS00605 (ACHP5S_00605) - 119222..119557 (+) 336 WP_096984576.1 cobalamin biosynthesis protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54427.72 Da        Isoelectric Point: 5.6070

>NTDB_id=950117 ACHP5S_RS00575 WP_000980602.1 113671..115098(-) (sbcB) [Escherichia coli strain GF43]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=950117 ACHP5S_RS00575 WP_000980602.1 113671..115098(-) (sbcB) [Escherichia coli strain GF43]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGCCAGCCGCGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581