Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WCY20_RS12465 Genome accession   NZ_CP147919
Coordinates   2527797..2528834 (-) Length   345 a.a.
NCBI ID   WP_345975574.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL3-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2522797..2533834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCY20_RS12450 (WCY20_12450) - 2525703..2526182 (-) 480 WP_345975569.1 AMIN domain-containing protein -
  WCY20_RS12455 (WCY20_12455) - 2526207..2526512 (-) 306 WP_345975570.1 hypothetical protein -
  WCY20_RS12460 (WCY20_12460) eno 2526532..2527800 (-) 1269 WP_345975572.1 phosphopyruvate hydratase -
  WCY20_RS12465 (WCY20_12465) recA 2527797..2528834 (-) 1038 WP_345975574.1 recombinase RecA Machinery gene
  WCY20_RS12470 (WCY20_12470) - 2529046..2529909 (+) 864 WP_345975576.1 MqnA/MqnD/SBP family protein -
  WCY20_RS12475 (WCY20_12475) - 2529917..2530780 (+) 864 WP_345975578.1 UDP-N-acetylmuramate dehydrogenase -
  WCY20_RS12480 (WCY20_12480) - 2530764..2531576 (-) 813 WP_345975580.1 TIGR04219 family outer membrane beta-barrel protein -
  WCY20_RS12485 (WCY20_12485) - 2531736..2532497 (-) 762 WP_345975582.1 TIGR04219 family outer membrane beta-barrel protein -
  WCY20_RS12490 (WCY20_12490) tpx 2532665..2533168 (-) 504 WP_345975583.1 thiol peroxidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37378.09 Da        Isoelectric Point: 4.9766

>NTDB_id=949744 WCY20_RS12465 WP_345975574.1 2527797..2528834(-) (recA) [Sulfurimonas sp. HSL3-7]
MDANKQKSLDLAMKQIDKAFGKGALMRLGDKEVEKIESISTGSLGLDLALGIGGVPKGRVIEIYGPESSGKTTLTLQITA
ECQKQGGVCAFIDAEHALDVNYAKNLGVDVDNLLVSQPDYGEQALDIVETIARSGAVDLIIIDSVAALTPKVEIEGEMND
QQVGVQARLMSKALRKLTAVLHKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRIDIRRIATLKQAEASIGN
RTKAKIVKNKVAPPFKQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYGDKKLGQGREKVKEAFKEDPALAAEIE
EKIKTAMGLSSVMDIEQSELEDVDI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=949744 WCY20_RS12465 WP_345975574.1 2527797..2528834(-) (recA) [Sulfurimonas sp. HSL3-7]
ATGGACGCAAATAAACAAAAATCACTTGACCTTGCAATGAAGCAGATCGACAAAGCCTTTGGAAAAGGGGCGTTGATGCG
CCTTGGTGACAAAGAGGTAGAGAAGATCGAATCGATCAGTACCGGTTCTTTGGGGCTTGATCTTGCTTTGGGCATAGGCG
GTGTGCCGAAAGGCCGGGTGATTGAGATCTATGGTCCAGAGAGTTCGGGTAAAACGACATTGACCCTGCAGATCACGGCC
GAGTGTCAGAAGCAGGGCGGTGTCTGTGCTTTTATTGATGCCGAACATGCACTTGATGTGAACTATGCCAAGAATCTGGG
TGTAGATGTTGACAATCTTTTGGTCTCTCAACCAGATTATGGCGAGCAGGCGTTAGACATCGTAGAGACGATTGCACGTT
CCGGTGCTGTCGATCTGATCATTATCGACTCGGTGGCGGCATTGACACCGAAAGTAGAGATAGAAGGCGAGATGAACGAT
CAGCAGGTGGGTGTCCAAGCACGTCTGATGTCAAAAGCCCTGCGCAAGCTGACGGCAGTCCTGCACAAGATGAACTGTAC
GGTTATCTTTATCAACCAGATCCGTATGAAGATCGGTATGATGGGGTATGGCTCACCTGAAACAACGACCGGCGGAAATG
CGCTGAAATTCTATTCATCTGTCCGCATCGATATCCGCCGTATCGCAACACTTAAGCAGGCAGAAGCCTCTATCGGTAAC
CGTACAAAAGCAAAGATCGTTAAAAATAAAGTGGCGCCGCCTTTTAAACAAGCAGAATTTGATATTATGTTTGGTGAAGG
CATCTCGAAAGAGGGCGAGCTTGTCGATTACGGTGTGAAACTGGACATCATTGACAAAAGCGGTGCATGGTTCTCGTACG
GGGATAAAAAACTCGGACAGGGACGAGAAAAGGTCAAAGAGGCGTTCAAAGAAGATCCTGCGCTGGCAGCGGAGATAGAA
GAAAAAATTAAAACAGCCATGGGGCTAAGCAGTGTCATGGACATTGAACAATCAGAATTGGAGGATGTAGATATATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

76.812

100

0.768
  recA Helicobacter pylori strain NCTC11637

76.522

100

0.765
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.877

96.522

0.742
  recA Acinetobacter baumannii D1279779

61.85

100

0.62
  recA Neisseria gonorrhoeae strain FA1090

60.87

100

0.609
  recA Neisseria gonorrhoeae MS11

60.87

100

0.609
  recA Neisseria gonorrhoeae MS11

60.87

100

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.783

0.6
  recA Acinetobacter baylyi ADP1

63.58

93.913

0.597
  recA Ralstonia pseudosolanacearum GMI1000

64.038

91.884

0.588
  recA Pseudomonas stutzeri DSM 10701

61.027

95.942

0.586
  recA Glaesserella parasuis strain SC1401

61.92

93.623

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.111

93.913

0.574
  recA Vibrio cholerae strain A1552

61.111

93.913

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

59.574

95.362

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.006

95.942

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

55.102

99.42

0.548
  recA Streptococcus pyogenes NZ131

57.012

95.072

0.542
  recA Streptococcus pneumoniae Rx1

54.07

99.71

0.539
  recA Streptococcus pneumoniae D39

54.07

99.71

0.539
  recA Streptococcus pneumoniae R6

54.07

99.71

0.539
  recA Streptococcus pneumoniae TIGR4

54.07

99.71

0.539
  recA Streptococcus mitis NCTC 12261

54.252

98.841

0.536
  recA Streptococcus mitis SK321

55.589

95.942

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.173

93.913

0.528
  recA Streptococcus mutans UA159

55.319

95.362

0.528