Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WCX87_RS10465 Genome accession   NZ_CP147917
Coordinates   2070370..2071413 (-) Length   347 a.a.
NCBI ID   WP_345979815.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL3-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065370..2076413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCX87_RS10445 (WCX87_10445) - 2066782..2068044 (-) 1263 WP_345979808.1 malic enzyme-like NAD(P)-binding protein -
  WCX87_RS10450 (WCX87_10450) - 2068085..2068738 (-) 654 WP_345979809.1 AMIN domain-containing protein -
  WCX87_RS10455 (WCX87_10455) - 2068779..2069057 (-) 279 WP_345979811.1 hypothetical protein -
  WCX87_RS10460 (WCX87_10460) eno 2069105..2070373 (-) 1269 WP_345979813.1 phosphopyruvate hydratase -
  WCX87_RS10465 (WCX87_10465) recA 2070370..2071413 (-) 1044 WP_345979815.1 recombinase RecA Machinery gene
  WCX87_RS10470 (WCX87_10470) - 2071606..2072469 (+) 864 WP_345979817.1 MqnA/MqnD/SBP family protein -
  WCX87_RS10475 (WCX87_10475) fliQ 2072466..2072735 (+) 270 WP_345981112.1 flagellar biosynthesis protein FliQ -
  WCX87_RS10480 (WCX87_10480) - 2072736..2073524 (+) 789 WP_345979819.1 UDP-N-acetylmuramate dehydrogenase -
  WCX87_RS10485 (WCX87_10485) - 2073534..2074205 (-) 672 WP_345979820.1 polysaccharide deacetylase family protein -
  WCX87_RS10490 (WCX87_10490) - 2074216..2074962 (-) 747 WP_345979822.1 TIGR04219 family outer membrane beta-barrel protein -
  WCX87_RS10495 (WCX87_10495) tpx 2075089..2075592 (-) 504 WP_345979823.1 thiol peroxidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37691.38 Da        Isoelectric Point: 4.8779

>NTDB_id=949722 WCX87_RS10465 WP_345979815.1 2070370..2071413(-) (recA) [Sulfurimonas sp. HSL3-2]
MDANKQKSLDLALKQLDKTFGKGTLMRLGDKEIEPIKAISTGSLGLDLALGIGGVPQGRIVEVYGPESSGKTTLALQITA
ECQKNGGVCAFIDAEHALDVVYAKNLGVDIDNLLVSQPDYGEQALDIVETIARSGAVDLIVIDSVAALTPKSEIEGEMSD
QNVGVQARLMSKALRKLTGILHKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGN
RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYEDVKLGQGRENVKQKFKDEPELAREIE
DKIKNAMGMSTLMTMDVSDIDEGDLDI

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=949722 WCX87_RS10465 WP_345979815.1 2070370..2071413(-) (recA) [Sulfurimonas sp. HSL3-2]
ATGGATGCAAACAAACAAAAATCATTAGACTTAGCATTAAAACAGTTAGATAAAACCTTTGGAAAAGGTACTTTGATGAG
ACTCGGCGATAAAGAGATCGAGCCTATCAAAGCGATAAGTACAGGTTCATTAGGGCTTGACCTGGCTCTTGGTATAGGCG
GAGTCCCTCAAGGACGTATAGTCGAAGTATATGGACCTGAGAGTTCTGGTAAAACGACTTTGGCACTGCAGATAACTGCA
GAGTGTCAAAAAAACGGCGGAGTGTGTGCATTTATCGATGCTGAGCATGCCCTTGATGTCGTCTATGCTAAAAATCTTGG
CGTAGATATAGATAATCTGCTTGTATCACAACCGGATTACGGCGAGCAGGCACTTGATATCGTTGAAACAATAGCGCGCA
GCGGGGCAGTCGATCTTATCGTTATCGACTCGGTCGCGGCACTTACGCCGAAATCTGAGATCGAAGGTGAGATGTCGGAT
CAAAATGTCGGTGTACAAGCACGTCTTATGTCAAAAGCACTTCGTAAGCTTACGGGTATTTTACATAAGATGAACTGTAC
GGTGATCTTTATCAACCAGATCCGTATGAAGATCGGTATGATGGGTTACGGTTCACCTGAGACTACAACAGGCGGAAACG
CACTGAAGTTCTACGCATCTGTGCGTATAGACGTCAGACGTATCGCTTCACTTAAACAGGGTGAGAGTCAGATCGGGAAC
CGCGTAAAAGCAAAAGTGATAAAAAATAAAGTAGCACCTCCTTTCCGTCAGGCAGAATTTGATATTATGTTTGGAGAAGG
AATCTCAAAAGAGGGCGAATTAGTCGATTATGGTGTAAAATTAGACATCATCGACAAAAGCGGTGCCTGGTTCTCGTATG
AAGACGTCAAACTTGGACAGGGACGCGAAAACGTTAAACAAAAATTTAAAGACGAGCCTGAACTGGCTCGCGAGATAGAA
GATAAAATTAAAAACGCTATGGGGATGAGTACACTTATGACCATGGACGTATCAGACATAGATGAAGGAGATTTAGATAT
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.326

99.135

0.767
  recA Helicobacter pylori 26695

78.049

94.524

0.738
  recA Helicobacter pylori strain NCTC11637

78.049

94.524

0.738
  recA Neisseria gonorrhoeae strain FA1090

62.319

99.424

0.62
  recA Neisseria gonorrhoeae MS11

62.319

99.424

0.62
  recA Neisseria gonorrhoeae MS11

62.319

99.424

0.62
  recA Acinetobacter baumannii D1279779

61.561

99.712

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

95.389

0.608
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.614

94.813

0.594
  recA Pseudomonas stutzeri DSM 10701

58.79

100

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

94.236

0.582
  recA Glaesserella parasuis strain SC1401

59.412

97.983

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

93.372

0.579
  recA Vibrio cholerae strain A1552

62.037

93.372

0.579
  recA Lactococcus lactis subsp. cremoris KW2

58.61

95.389

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

55.394

98.847

0.548
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Streptococcus pneumoniae Rx1

55.589

95.389

0.53
  recA Streptococcus pneumoniae D39

55.589

95.389

0.53
  recA Streptococcus pneumoniae R6

55.589

95.389

0.53
  recA Streptococcus pneumoniae TIGR4

55.589

95.389

0.53
  recA Streptococcus mitis SK321

55.589

95.389

0.53
  recA Streptococcus mitis NCTC 12261

55.589

95.389

0.53
  recA Streptococcus mutans UA159

55.623

94.813

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

93.372

0.527